Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq401 275 2e-69 seq5385 96.9 1e-15 >seq401 Length=77198 Score = 275 bits (304), Expect = 2e-69 Identities = 553/818 (68%), Gaps = 4/818 (0%) Strand=Plus/Plus Query 43184 GCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGCCTCGACGAAGGC 43243 |||||| ||||| ||| |||| ||||| ||||| ||| ||| || || |||||||| Sbjct 69755 GCCGTCTTCGACATTCAGCCTGTTCAGCGATCGCCAGTCCTTGCCCGCTTCAACGAAGGC 69814 Query 43244 AAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGGGCCGCCTGCAGG 43303 || | || ||| ||||| | ||| || || || || | || ||||| | Sbjct 69815 CAGCCTCAACCAAGTCTTGAAAAACAGGTTCGGTACGCGGTGCATTGGACCGCCGTCGAA 69874 Query 43304 GTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCGCAGGCGCTTCTTTTC 43363 | ||| || || |||| | ||||| ||||| || || || ||| || | Sbjct 69875 ATGGCCGGGGAGAGGCATACGGCCCAGGATATCGCCTACCGAACGAAGCGACTTTTTCAC 69934 Query 43364 GGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCG--CAACAAGCAGGAAGCGC 43421 || || || | ||| ||||| | ||| || ||| | || |||||||| || Sbjct 69935 AGGTTCATAGATGAAGTCCGGCACCTT--GTTGATGTTGCGGCCGACGAGCAGGAATCGT 69992 Query 43422 TTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGTCTCGGCGACGGCG 43481 || ||| ||| | | || |||| || ||||| ||||| || |||||||| |||| Sbjct 69993 TTACGGGATTGAGCGAGGCCACCGAGCTCGCCGCAATCGTGCGTCGTCTCGGCAGTGGCG 70052 Query 43482 AAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATG 43541 | ||||| |||||||| || |||||||||||| | ||||||||| ||| | Sbjct 70053 TACCCGTAGCGGCGCAGCAGTTGAACGATCTGATCGAGGAGGCGGCGGCCACGATTCTGG 70112 Query 43542 ATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGC 43601 ||||| ||||| || ||||||| |||||||| || || | |||| |||||| |||||| Sbjct 70113 ATGCGAGGCACGTTCTCGAAAACGATCAGCTCCGGGAGGTCATCCTGGAAGGCCTCCAGC 70172 Query 43602 ATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTC 43661 |||||||| ||||| || | || || || || | ||||| |||||||||||| ||| Sbjct 70173 ATCAGCCATACGCCACGTAGGGTTAGACGGTTCAATGCCTGGTACTTGGCGGTCTTGCTG 70232 Query 43662 GACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCG 43721 | || ||||||| ||| ||| |||||||| || || || | ||| ||||||| | Sbjct 70233 CGGTTTTCCGACAGCAGTCCGCTGAACCCTTTGCAGGGGGCCGAGAGGAAGACGATATGG 70292 Query 43722 GGGAACTCGCCATGCGCTGCGCGCCGAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGA 43781 ||| | ||||| || || | || || || ||| || | |||| || | Sbjct 70293 GGGTATTCGCCGCCGGCCGCATGACGGATATCTGCCGCAGTGGCTTCGCGCCACTCCCGC 70352 Query 43782 TCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTG 43841 || || | ||| ||| || | |||| || | ||||| |||||||| | ||| Sbjct 70353 GGCGGCTCTTTGCCGTGGAAGTCCTTGAACTGATCACGATCGAAGAGATCGAGGACGGTT 70412 Query 43842 CCGGGAACGCCGGCAAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCC 43901 ||| || ||| ||||| ||||| ||||| || |||| | | ||||||||| Sbjct 70413 CCGCGAGATCCGCTGAGGCGTTCAAAATCCCGGATTGCTGCCGCGTTGACGTCGATGCCA 70472 Query 43902 CCGATGCAGCGGAACTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCT 43961 |||||||||||||||||| | | || | || || |||| | |||||||| ||| Sbjct 70473 CCGATGCAGCGGAACTTGCCTTGGAGGTTCCCTACGCGAGGGTTGGCTTTGTTGAAACCT 70532 Query 43962 TTGGCGCCGGCACCGAGCCCGCAAAACAGATGAAAGTG 43999 || || || | || |||||||| ||||| || || || Sbjct 70533 TTAGCTCCACCGCCCAGCCCGCAGAACAGGTGGAAATG 70570 Score = 82.4 bits (90), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 41910 GTCTCGCCGGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC 41969 |||| ||| || | | || || || ||||| || | | ||| ||||||| || Sbjct 68625 GTCTGCCCGCTCCAGACCAGGAGTAGGGTGGTACCGAACGCCTCGCCGATCGCTTCGGCT 68684 Query 41970 GCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCG 42029 |||||||| || |||||||| ||||| ||||| | ||| | |||||| | |||||| Sbjct 68685 GCATCCGGGGGCACCGCGTTGCCGATCCGCTCCCTCCAGTCACCATCGGAGAGCCCGTCG 68744 Query 42030 AGGGTGA-ATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGT 42088 || | ||| ||| || || || | ||||| || | ||| | ||||| ||||| Sbjct 68745 AGTTCCAGATA-CTCTTCCGGCTCGATCAGGCTTTGGAGCGCACAGAGTTCGAGCGTGGT 68803 Query 42089 GAACGGACGATGCCACGTG 42107 ||| ||||||||||| ||| Sbjct 68804 GAAGGGACGATGCCAGGTG 68822 >seq5385 Length=1239 Score = 96.9 bits (106), Expect = 1e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 44066 GATCATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTC 44125 || ||||||||| || | ||| |||||||| || || | ||| | ||||||| Sbjct 616 GACCATGCCGAGGGCGTTCATGTACAGCTCGAGGATCGCTTCCTCTTCCTTGCGCTCGTT 557 Query 44126 GGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCC 44185 | |||| ||||||||| || | | | || | |||||||| ||| ||||| || Sbjct 556 CGCATCCTTCTTGCGCAGGCGGACGATCGTGCGGATGATCTTGGTGTCGTAGCCGCGGCC 497 Query 44186 CTTTGCCTC-GCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCA 44244 ||| || || ||| | ||| |||||||||||||| | || ||||||||||||| | Sbjct 496 CTTGGCTTCCGCCAT-CACTTCCTTGATGTCGTCCTGAAGCGTGGTCTTTTCTTCCTCAA 438 Query 44245 AGCGTTCGATGCGGTGGATGAA 44266 ||| |||||||| | |||||| Sbjct 437 GGCGCTCGATGCGCTCGATGAA 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183587083380972