Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq716 105 2e-18 seq191 82.4 2e-11 >seq716 Length=76659 Score = 105 bits (116), Expect = 2e-18 Identities = 278/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 30400 ACGGCGTGGCGACGGCTTATGTGGAAGGCGGC-ACGTTGCGGATCCAGCGTTCCGTAACC 30458 ||||| | || || ||||| |||||||| |||| ||| || ||||| || | ||| Sbjct 24566 ACGGCATCGCCACCGCTTACTACGAAGGCGGTTACGT-GCGCATTCAGCGGGCCATCACC 24624 Query 30459 ACATACAAAAAGAATGCATATGGCGTGGCAGACAACAGCTATCTGGACAGTGAAACACTG 30518 || ||| | ||||| || | ||| ||| ||||| |||||||||||| ||||| ||| Sbjct 24625 ACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATTCCTATCTGGACAGCGAAACCCTG 24684 Query 30519 CATACCAG--CGCATATGTTCTTCGCAAACTGAAATCGGTCATCACAAGCAAGTACGGAC 30576 | ||||| || | | | | ||| ||| | || ||||| ||||||||||| | Sbjct 24685 C--ACCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGC 24742 Query 30577 GCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTCCTGGGCAGGCGATTGTTACTCCTG 30636 ||||||| || || ||| || || || ||||| | || ||| |||| || || || Sbjct 24743 GCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGA 24802 Query 30637 CCGTTATCAAAGGGGAGCTTCTGGCGACATATCGTC-AGATGGAGCGTGCCGGTATTGTG 30695 | ||| || ||||| | || || || | || | || | | || |||| Sbjct 24803 GCACCATCCGCGGTGAGCTGATTGC-CCAGTACGCCAAGCTCGAACTGGAAGGCCATGTG 24861 Query 30696 GAAAATTACGATCTGTTTAAACAGTATCTGATAGTTGAGCGTGATGCGGATAACCCGAAC 30755 || || ||| ||||| || | ||||| || ||||| || | |||||| | Sbjct 24862 GAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCGAGCGCGACAGCCAGGACCCGAGC 24921 Query 30756 CGACTGAACACGCTGTTCCCGCCGGATTATGTTAACCAGTTACGTGTCTTTGCGGTG 30812 || | ||| |||||||||||||||||| || ||| | | || || || ||| || Sbjct 24922 CGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACGGGCTGCGGGTGTTCGCGCTG 24978 >seq191 Length=2067 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 15528 TATCCTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGCCTGGCGGGTTTTT 15587 ||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| Sbjct 287 TATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCTGGTTTTT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136101707375238