Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq19 168 6e-37 >seq19 Length=879724 Score = 168 bits (186), Expect = 6e-37 Identities = 766/1194 (64%), Gaps = 38/1194 (3%) Strand=Plus/Minus Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCAT 37495 |||| || ||||| ||||||| | ||||||| |||||||| |||| || || |||| Sbjct 585912 AATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCAAATGGTA 585853 Query 37496 AGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTT 37555 | | || | ||||| |||| ||||| ||||| ||||| | ||| | ||||| || Sbjct 585852 AACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGTCTGTGGC 585793 Query 37556 TCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTA 37615 | | || || | | ||| || ||||||||||| ||| || |||||||| | Sbjct 585792 GCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATTTTATTCA 585733 Query 37616 GATTTT---TAACTAG-TATTTT-CGTAATTATTCTCAACTTGTCGAACAT-AAATACGT 37669 | || || | | || || | | || || || || | || || ||| | Sbjct 585732 GGTTCAGGGTAGCCTGATAGGTTACATCAT-AT----AATTTCT-GATGATCAAACTCTC 585679 Query 37670 TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 || | |||||| | ||| | | || | || |||||||||||||| || |||| Sbjct 585678 CGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCTT 585619 Query 37730 CGTTACTAAATTGTATAATCTCTGTACAGAGATT---ACTCGATCTAATTGTTCCCAAAT 37786 | | || | | |||||| |||||||| || || ||| | | || ||||| |||| Sbjct 585618 TGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACT---TTTGATGGTTCCTAAAT 585562 Query 37787 TGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTT 37846 | || |||||||| | || | ||||||||| | | ||| || ||||| || Sbjct 585561 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 585502 Query 37847 CTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATCGCTTTA--- 37902 | || || | || | ||| | ||| || || | |||||||| | | |||| Sbjct 585501 CAATCTGTGAATCCAGAATGGCAAACCA-AAGCTCTTGTGCTTTAATGGT---TTTACGG 585446 Query 37903 --AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA- 37959 | | |||||| |||||| |||||| | || || | | || | || Sbjct 585445 GCACGTCCTTCTTT--TTCGTAACGCTCATATAAAGCATCGAATTC-TGCACCAAAGCAA 585389 Query 37960 TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACG 38019 || | ||| || ||| ||||| | || | ||| ||| | | || |||||| Sbjct 585388 TCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACC 585329 Query 38020 CGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCT 38079 | | ||| || | ||| |||||| | ||| ||||||||| ||| | | |||| Sbjct 585328 CTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCT 585269 Query 38080 TCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCT 38139 || || || || || | | | |||||| | | ||| || |||||||| || Sbjct 585268 TCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCC 585209 Query 38140 ATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTG 38199 | ||||| | | || ||| | |||| | || ||||| | | ||| | | || Sbjct 585208 AGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTA 585149 Query 38200 TTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATA 38259 | ||| ||| | | ||||||||||| || ||||| | |||||| | || ||| Sbjct 585148 TCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAATA 585089 Query 38260 TAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT 38319 |||| ||| | || || || ||| || || || || |||||||| || ||| Sbjct 585088 TAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTGAA 585029 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 ||| |||| ||||||||| ||||| | || ||||| |||||||| |||| || | Sbjct 585028 ATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTC 584969 Query 38380 AGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 |||| ||| || |||||||||||| || || | || |||||||| || || | | Sbjct 584968 AGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTT 584909 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATAT 38497 ||||| | ||||| || || || | ||||| ||| | || || || |||| Sbjct 584908 GCATGCGTAAACCAGCGCTC--ACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 584851 Query 38498 CACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTT 38557 | | |||||| |||| | || | ||| | || |||||| || | ||||| | || Sbjct 584850 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTA-CAATT 584792 Query 38558 TATTATTCT-GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | | |||| ||| || ||||| |||||||| | ||||| | ||||||||| Sbjct 584791 TGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAA 584738 Score = 147 bits (162), Expect = 2e-30 Identities = 579/896 (65%), Gaps = 21/896 (2%) Strand=Plus/Minus Query 11324 GTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCT 11383 || |||||||| | |||||||| |||| || ||| || || ||||| || || ||| Sbjct 584148 GTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCT 584089 Query 11384 TCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAA 11443 | || || || ||||||||| ||| ||||| ||| | | ||| | || Sbjct 584088 TGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAA 584029 Query 11444 CCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAA 11503 || | || | |||| ||||| || || || |||||||| ||||| | | Sbjct 584028 CCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCA 583969 Query 11504 TTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACC 11563 ||||| || || || | ||||| | ||| |||| | ||| |||||||| || | ||| Sbjct 583968 TTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACC 583909 Query 11564 GCATCAATGATTAT-CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAA 11622 || || ||| || | | | | ||||||| || || | | |||| | Sbjct 583908 GCGTCGCGGATAATTCCATGA-ACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATA 583850 Query 11623 CATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAA 11682 | | || ||||| |||||||| | || || ||||| || | |||||| ||| Sbjct 583849 AAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAA 583790 Query 11683 TGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGA 11742 |||| || ||||||| |||| |||||| | ||| || || | | || | | || | Sbjct 583789 GGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGC 583731 Query 11743 A-AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGC 11801 ||||| || || ||||| || || || || || | | ||| || | || || Sbjct 583730 TGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAA---TTTCCGC 583674 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 ||||| ||||| || ||||| || ||||| || | || |||| | Sbjct 583673 CCTCAATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGG 583614 Query 11862 CGTTAAATAAATGCAT---TTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | | || | || | ||||||| | |||| | | ||| ||||| || | | Sbjct 583613 CATGGAACA---GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCG 583557 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 ||| |||| || || || |||||||| || || || ||||| ||||| || || | Sbjct 583556 CATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTT 583497 Query 11979 CTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 | | | |||||| || | ||| || | | | || | || ||||||||||| || ||| Sbjct 583496 CGGGAAGCTGTACTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCA 583438 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 || | |||||||| || |||||||| || || | ||| || || |||| || Sbjct 583437 CTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTG 583378 Query 12098 TCCCAAT-CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC--C 12154 ||||| | | ||| || | || | || | ||||||| ||||||| |||||||| | Sbjct 583377 TCCCAGTGCTTCT-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTC 583319 Query 12155 ACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 ||| | |||||||||| |||||| ||| | || |||||||| |||| ||| || Sbjct 583318 ACT--CTTCTTATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468464319304880