Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 seq1971 96.9 3e-15 seq504 86.0 6e-12 >seq19 Length=879724 Score = 104 bits (114), Expect = 2e-17 Identities = 337/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| ||||| ||||| | || ||||||||| ||||| || || || Sbjct 583625 GTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGGGCGGAAA---- 583680 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||||||| |||| || || || ||||||||| | || || || || Sbjct 583681 --TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGC 583738 Query 52669 TTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 || | || || | | |||| ||| | ||||| || || || ||||| || Sbjct 583739 TTCTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAAT 583798 Query 52729 GAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACG 52788 |||||||| || | || || || ||||| || ||||| || || |||||| | | Sbjct 583799 GAGTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATG 583858 Query 52789 CGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGAC 52848 | | ||| | ||| || | ||| ||| | || | || || || || Sbjct 583859 CTC---AAAAATAAACTGAGCCAGGAAGTCGTTCATGGAATTATCCGCGACGCGGTAGAA 583915 Query 52849 ATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACC 52908 || ||||| || ||| |||| || || || || || | || | || ||||| || | Sbjct 583916 ATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAA 583975 Query 52909 ATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCA-GCC 52967 |||||| |||| || ||||||||||| |||||| | || | | || ||| | || Sbjct 583976 CTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACC 584035 Query 52968 GAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAA 53027 ||||| ||| |||| || || ||| |||||| | | || || || | ||||| Sbjct 584036 AAAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAA 584094 Query 53028 AACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 ||| || || || |||| ||||||||| || || ||||| Sbjct 584095 AACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 584133 >seq1971 Length=9940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||| || |||| ||| || ||||| || ||| Sbjct 4111 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 4052 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||| || || ||||| || || || || ||||| ||| || || || Sbjct 4051 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTG-GTCTT 3993 Query 139688 AGCTGTTC-CACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || || | |||| ||||||||||| ||| | ||||||||||||| | Sbjct 3992 GAC-GTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGG 3934 Query 139746 TTTTTACGAATATTTGCATAG 139766 | || ||||| |||||||||| Sbjct 3933 TCTTGACGAAAATTTGCATAG 3913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || || ||||| || ||| Sbjct 4597 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4538 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || || || || || ||| |||| ||||| ||||| ||||| || Sbjct 4537 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 4478 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 4477 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACC 4418 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||||||||||| || || ||||| || |||||| || Sbjct 4417 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATACCT 4367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| ||||| Sbjct 4369 CCTCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 4310 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || ||||| | || ||||| || || ||||| || Sbjct 4309 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4250 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 4249 ATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACC 4190 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||||||||| | || || ||||| || |||||| || Sbjct 4189 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCT 4139 >seq504 Length=56252 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 58287 GCCTCAATGTTGCCCAAATCGCCGACGTGTCGCACCGCAGCGTTAGGCGCGCCATGATTG 58346 ||||| | ||||||||| || |||||||| || || | ||| | || || || || | Sbjct 35825 GCCTCGAGGTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGTGGGGGCTCCGTGCTC- 35883 Query 58347 CTACCCGTAGGA-TTGAAATGTTCGCCGGCCGAAGTGCATCCGTTACTCATATCGCCAAA 58405 || ||| ||| ||||| || ||||||| || |||| ||||| | | |||||||| Sbjct 35884 CTTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTTGGTGGTGTCGCCAAA 35943 Query 58406 TTCGTGCACGTGAAAGCCGTGCAGTCCTTTC 58436 | ||| ||||| || ||||||||||| ||| Sbjct 35944 CTGGTGGACGTGGAATCCGTGCAGTCCCTTC 35974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495999964338400