Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq19 163 3e-35 >seq19 Length=879724 Score = 163 bits (180), Expect = 3e-35 Identities = 569/881 (65%), Gaps = 14/881 (2%) Strand=Plus/Minus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13697 | |||||||||||||| ||| || || ||| | | | ||| | |||| ||||| Sbjct 584075 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 584017 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || |||| || |||| |||||||||||| || ||||| | | |||||| || || Sbjct 584016 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 583957 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || || || | || || | |||||| ||||| || || || || ||| Sbjct 583956 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 583897 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 13875 || || | || | | || |||||| || |||| ||| | || | Sbjct 583896 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 583839 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 583838 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 583779 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||||| |||| |||||| ||||| || || | | || |||| ||||| || | Sbjct 583778 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 583719 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || ||||| || || || | || ||||| |||| ||| | | |||| Sbjct 583718 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 583665 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 | |||||||| | |||||| || | | || | || || | |||| || | Sbjct 583664 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 583605 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 583604 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 583545 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| ||||||||||| ||||| || |||||||| || | ||||| | |||| Sbjct 583544 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 583485 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 |||| | | || | | | || | |||||||| || || || ||||| || |||||| Sbjct 583484 CTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 583426 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT 14354 || || | ||| | ||| || | |||| | | || | || | ||| | Sbjct 583425 AAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTC 583366 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 || | |||||| || | ||| ||| | ||||| ||||| || || || |||||| Sbjct 583365 TGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATAC 583306 Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| |||| ||||| ||| ||||| |||| ||||| Sbjct 583305 ATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479666073111800