Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 318 8e-82 >seq19 Length=879724 Score = 318 bits (352), Expect = 8e-82 Identities = 1038/1584 (66%), Gaps = 40/1584 (3%) Strand=Plus/Minus Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| ||||| | ||||| | | || ||| | || |||||||| Sbjct 585912 AATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCAAATGGTA 585853 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 || | || ||||| || ||||| ||||| || || || | ||| | |||||||| | Sbjct 585852 AACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGTCTGTGGC 585793 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 | | || ||| ||| |||||| | |||||||||||| ||| ||||||||||| | Sbjct 585792 GCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATTTTATTCA 585733 Query 71621 GATTTCTGACTATTACT--TTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC-CCAT 71677 | || | | || || | | ||||| | || ||| || |||||| ||| || | Sbjct 585732 GGTT-CAGGGTAGC-CTGATAGGTTACATCATATAATTTCTGATGATCAAA-CTCTCCGT 585676 Query 71678 CTATTACAAA-CACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAG 71734 || ||||| | | ||| |||| || ||||| ||||| || || ||||| | | | Sbjct 585675 TGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGCAACCTCGTCTTTG 585617 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | ||| | ||||||||| || ||||| || || ||||||||||||||||||| Sbjct 585616 GAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAATTTT 585559 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 | || || || |||| ||||| ||||| | | | | || || || ||||||| Sbjct 585558 GCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTTCAA 585499 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTC 71913 |||| || || | ||| || ||| | || | || || || | || | | | || Sbjct 585498 TCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTTACGGGCACGTC 585439 Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAA 71972 || || ||||||| | |||||| ||||| || | || ||||| | | | | Sbjct 585438 CTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATCTGCCAG 585381 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 ||| || ||||| ||||| | || ||| ||||| | || | ||| | | |||| Sbjct 585380 TCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCAT 585321 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 || || ||| | |||||| || ||| |||| |||||||| | | | || || || | Sbjct 585320 GAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTTCTTTAC 585262 Query 72092 CTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || |||||| || || || || || | ||| | |||||| || |||| || Sbjct 585261 C---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCCAGGT 585205 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | | | || ||||| ||| ||||| || | || | ||||| | | Sbjct 585204 AAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGT 585145 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 || | ||| ||||||| || | ||| |||||| | || || || || ||||| Sbjct 585144 TAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAG 585085 Query 72269 TTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 ||| ||||||| || || || || ||| || || ||||| ||| || ||| Sbjct 585084 ATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTGAAATTT 585025 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 ||| | ||||||| ||||| || || || || ||||| || ||| |||| | |||| Sbjct 585024 TAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTA 584965 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 ||| ||| ||||||||| | | || | ||||||||||| || || | || | Sbjct 584964 AAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCAT 584905 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 |||||||||| ||| || || || ||||| |||| || ||| ||||| || Sbjct 584904 GCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATATCTTCTT 584845 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || || ||||| || |||||||| |||| ||| || || | ||| || || |||| | Sbjct 584844 TGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-TTGTCCT 584786 Query 72569 T-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 | |||||||| || ||||||||||| | |||||||| |||||||| | | || ||| Sbjct 584785 TCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAATCCAAAA 584726 Query 72628 TCTCGTTCGTAAATAAT--AACCGAATTGAGTTTAT-CCTTATATTTGTTAAC--TATAT 72682 || | || |||||||| | | || | | | | || | |||| | || | Sbjct 584725 TCCCTGTCATAAATAATGGTGCTGTCCAGAATCTCTGCATTTTCTTTGATCACCTCCCAA 584666 Query 72683 CCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 72742 ||| || || ||| | | || | ||| | |||| | || |||||||| Sbjct 584665 ACATCGT-----CTGCAATCAGTGAAGCAGATTTGTCTGTTTTGGAATCCACATAGTT-- 584613 Query 72743 ATAAATC--CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 ||| | | |||||| || || ||| | || | |||||| ||||| ||||| Sbjct 584612 ATACAGCATCTCCATGGTTTTGGAGAAAGATTTCGTGGTGTTCTTGTGCAGATTAGATAC 584553 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTAT 72860 || || | || || | | |||||||| ||||| | || || | ||||| | Sbjct 584552 CGCAATACGGGAAGCCAATAATGCATAATCAGGATGCTTGGTGGTCAGCGAAGCTGCCGT 584493 Query 72861 TTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 ||| || ||||| | |||| |||| || ||||| |||| || | |||| || || Sbjct 584492 TTCCGCAGCCAGGTTATCCAGTTCTGAGGTGGTTACCCCATCGTACAAACCTTCAATTAC 584433 Query 72921 CTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT 72980 ||| | || | | ||| ||||| | | || | || |||||||| || | ||| Sbjct 584432 CTTTTTCGCCACATCAATCGGATCCACCAGTTCTGCATTAAAGCCATAGCAGAGCTTTTC 584373 Query 72981 AATACGAGACGTGATTTTATCAAA 73004 |||||| | || |||||||| || Sbjct 584372 AATACGGGCGGTTATTTTATCGAA 584349 Score = 242 bits (268), Expect = 5e-59 Identities = 584/877 (67%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 ||||||| || |||||||||||||| || || ||||| || || |||| || || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 | ||||| ||||||||||||||||| ||| ||| ||||| || | |||| ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | |||| ||||| | || || ||||| | ||||| || |||||| || || | Sbjct 584015 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 583956 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 583955 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 583896 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 | || ||| | ||| || || | |||| | | || || || | Sbjct 583895 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 583836 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || || |||| ||||||||||| ||| || || || ||| || || || |||| Sbjct 583835 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 583776 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA-AAGAAGATTCCT 42190 | ||||| | ||||| | ||| || || || || | | ||| | ||||| || ||| Sbjct 583775 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 583717 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 42250 || ||||| || || || | | | || || || | | ||| ||||| Sbjct 583716 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 583660 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| || || || || ||||||||||| | ||| |||| ||||| || || | Sbjct 583659 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 583600 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | |||||| | | |||||||| ||| |||||||||| || ||| |||| || || Sbjct 583599 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 583540 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||||||| || ||||| || || || ||||| | ||| |||| || ||||||||| Sbjct 583539 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC- 583481 Query 42431 GTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 | || | ||||| || | ||||| || || || |||||||| || |||||||| | Sbjct 583480 GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 583422 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATAT 42548 | | || ||| || |||| ||| | | |||| || | ||| | || | Sbjct 583421 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 583362 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | | ||| | || | |||||| | ||||| || |||||| ||| |||||||| | Sbjct 583361 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 583302 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||| ||| | |||| ||| || |||| |||||| Sbjct 583301 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671052564318520