Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq19 131 2e-25 seq374 84.2 2e-11 seq504 82.4 8e-11 >seq19 Length=879724 Score = 131 bits (144), Expect = 2e-25 Identities = 309/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 50406 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50465 ||| ||||||||||| ||||| || ||| ||| ||||| | || || ||| ||||| Sbjct 583681 TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTT 583740 Query 50466 TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50525 | || || | | |||| |||| | ||||| || || || ||||| || || Sbjct 583741 CTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGA 583800 Query 50526 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCG 50585 ||||||||| | || || || ||||| || ||||| || || || || | || Sbjct 583801 GTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCT 583860 Query 50586 CGTAAATGAAAAATTATCATACGAAACAATTT-TGGACATGTTCAAAGAAGCCGTCGACA 50644 | |||| ||| | | | | ||| || |||| || || || || || || | Sbjct 583861 CAAAAAT--AAACTGAGCC-AGGAAGTCGTTCATGGA-ATTATCCGCGACGCGGTAGAAA 583916 Query 50645 TCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACA 50704 ||||||| || ||| | || || || || || || || || | || ||||| ||| | Sbjct 583917 TCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAAC 583976 Query 50705 TGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACA-ACCG 50763 |||||| |||| |||||||||||||||||||||| | || | | ||||| | ||| Sbjct 583977 TGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACCA 584036 Query 50764 AAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAA 50823 ||||| ||| |||| || || ||| |||||| | | || || || | |||||| Sbjct 584037 AAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 584095 Query 50824 ACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50860 || || || || || | |||||| || || || ||||| Sbjct 584096 ACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 584133 >seq374 Length=102525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| ||||| || || || Sbjct 845 GTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 786 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| || |||||||| || ||||| || ||||| ||| || || Sbjct 785 GCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTG 726 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| | || || || | ||| | ||||| || || | || Sbjct 725 ACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTC 666 Query 143168 TTTACGAATATTTGCATAGCT 143188 |||||||| ||||||||| || Sbjct 665 TTTACGAAAATTTGCATACCT 645 >seq504 Length=56252 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 60450 || || | ||||||||| || |||||||| | || | ||| |||| || || || | Sbjct 35825 GCCTCGAGGTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGTGGGGGCTCCGTGCTCC 35884 Query 60451 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 60510 | || || || || || | ||||| || | ||||||||| || |||||||||| Sbjct 35885 TTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTTGGTGGTGTCGCCAAAC 35944 Query 60511 TCGTGTACGTGAAAACCGTGCAGTCCTTTC 60540 | ||| ||||| || ||||||||||| ||| Sbjct 35945 TGGTGGACGTGGAATCCGTGCAGTCCCTTC 35974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506948950778640