Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1288 214 3e-50 seq44 145 1e-29 >seq1288 Length=22276 Score = 214 bits (236), Expect = 3e-50 Identities = 588/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| ||| | ||||| ||| |||||||| ||||| |||| || || | Sbjct 97 TGTTCCCTATCAAGTACCCCGACATCTGGAGCATGTACAAGAAGGCCGAGGCGTCGTTCT 156 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||| |||| || | ||||| | ||| ||||| || | | | Sbjct 157 GGACGGCGGAGGAGATCGACCTCGCGGGCGACCTCTCCGACTGGGACACCAAGCTCAACG 216 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | | ||||| | ||||| | || | | ||||||||||| | || || || |||| Sbjct 217 ACAACGAGCGCCACTTTATCACCAACGTGCTCGCCTTCTTTGCGGCGTCGGACGGCATCG 276 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 ||||||| || || || || ||| | || ||| || || || |||| | ||| Sbjct 277 TCAACGAGAACCTCGCCACGCGCTTCATGTCC-GAGGTGCAAATCCCCGAGGCGCGCTGC 335 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||||||| || || ||| | ||||| || | |||| | ||||| Sbjct 336 TTCTACGGCTTCCAAATCGCCATCGAAAACATCCACTCCGAGACGTACAGTCTGCTGATC 395 Query 125295 GACATGTACATTCGCGAT-CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 |||| ||||| || |||| || || | |||||| ||||| ||||| ||| | Sbjct 396 GACACCTACATCAAGGACACCGCG-CGCAAGGCCCAGCTCTTCAACGCCATCGAGACGAT 454 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC--GACAAGTCT 125411 || | | || || ||||| | |||| ||| || |||||||| || | || | Sbjct 455 CCCCGCCGTGCGCAAGAAGGCCGAGTGGGCGATCCGCTGGATCGAAAACTCGCGCAGCTT 514 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 | ||||| | || || || || |||||||| |||||||||||||| ||||| | | Sbjct 515 T-----GCCGAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCG 569 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| | ||||| ||||||||||||||||| ||||||| ||| || || | || Sbjct 570 TTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCTTCTCGAA 628 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCA 125589 |||| | || || ||||||||||| ||||| ||||||||| ||| || | ||| | Sbjct 629 CGAGCTGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGTCTGCTCTACTCGAA 688 Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTC-ATCAACATTGTAACCGAT 125648 | || |||| || || || | | | | ||| |||| | | ||| Sbjct 689 GC--TCACCGTCTCGCGTCTGGACGCGCCCACCATCGAGTCGATCATCCGCGACGCCGTC 746 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 ||| || | ||| | ||||| | ||||| | || || ||| | |||| |||||| Sbjct 747 GCC-TGCG---AGA--AGGAGTTCATCACCGAGGCGCTGCCCGTCGACCTGATCGGCATG 800 Query 125709 AACTGCAAGCTA-ATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 ||| || |||| ||| | ||||||| ||||| || || ||||| ||| || | Sbjct 801 AACAGC-CGCTACATGGCCCAGTACATCGAGTTCTGCGCCGACCGTCTGCTGGTCGCCCT 859 Query 125768 GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 ||||||||| ||||||||| || || || || | ||| | || || || Sbjct 860 CGGCTACCGCAAGATCTACAACGCCGCCAACCCGTTCGAGTGGATGGAGATGATCTCTCT 919 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || | ||||| ||||| ||||| | |||||| |||||| Sbjct 920 CCAGCGCAAGACAAACTTCTTCGAAAGCAAGGTCTCGGAGTAC 962 >seq44 Length=77107 Score = 145 bits (160), Expect = 1e-29 Identities = 185/244 (76%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 97987 ACAATGGGTCCATTCAAAACATTACCAT--CATCCCGGAAGAGTTGC-GCAGAATCTACA 98043 |||| || ||||| || ||||| ||| ||| || || ||||| | || |||||| Sbjct 10705 ACAAGGGTTCCATCCAGAACAT--CCAGGGCATTCCTGACGAGTTAAAGGAGC-TCTACA 10761 Query 98044 AGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGAGGTGTC 98102 |||||||||||||||| ||| | | | || || ||||| |||||||||||| | |||| | Sbjct 10762 AGACTGTCTGGGAGAT-CCGTCAACGTACCCTCATCGACATGGCTGCCGACCGTGGTGCC 10820 Query 98103 TACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC--GTA 98160 | || |||||||| || |||||||| ||| | | |||||||| | || | | || Sbjct 10821 TTTATCGACCAGAGCCAGTCGTTCAACGTGTTCATCGCCGAGCCAAACT-TTGCCAAGT- 10878 Query 98161 TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGA 98220 ||||||| || ||||| ||||| ||||| ||||| || ||||| || |||||||| || | Sbjct 10879 TGACTTCAATGCACTTCTACGCTTGGAAGAAGGGTCTGAAGACTGGAATGTACTACCTCA 10938 Query 98221 GAAC 98224 |||| Sbjct 10939 GAAC 10942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740963538520520