Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq406 190 5e-44 seq4950 185 2e-42 seq98 170 5e-38 seq716 165 2e-36 seq4719 104 6e-18 seq846 93.3 1e-14 >seq406 Length=38937 Score = 190 bits (210), Expect = 5e-44 Identities = 396/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 37390 CCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGGTATCCGCATAT 37449 |||||| | | || || ||||| || | | ||| | |||||||||||| |||||| Sbjct 1340 CCAATTCCGCCGCGCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATAT 1281 Query 37450 TACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCCATGTTCATTGC 37509 || |||||||||| || || || || ||| ||| | ||||| ||||| || || Sbjct 1280 CACCGCGGCAATGAAAGAGTTTGGCATCGAACAACCGCTGCACCAGGCGATGTTTATCGC 1221 Query 37510 ACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTCAACTACTCGGT 37569 || || |||||||| ||| | || |||||| |||| || | |||||||||| || Sbjct 1220 GCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTACAGCGT 1161 Query 37570 AGATGGGCTGATGAAAACCTTTGGTAAA---CGCCTGACGCCGTATCAGTGTGAAATGCT 37626 || |||||| | | ||| ||||| || | | |||| | | ||| Sbjct 1160 AGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACTCAGGGTCAGGCTAACGCGCT 1101 Query 37627 GGGGCGTGTCGATGGT-AAGCA--------GGTGGCCCACCAGCCGCAAATAGCCAATCT 37677 ||| ||| | |||| || || | ||| | ||||| || ||||| || Sbjct 1100 GGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGCCAGCGTGCGATCGCCAACCT 1041 Query 37678 AGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGA--GATGGCTGGAAGTATCGCGGG 37735 || ||| | | ||||| ||||| | | | || || |||||| || | |||| Sbjct 1040 GGTGTACAGCAAAAGAATGGGGAACAACG--GTCCGACTGACGGCTGGTTTTACCTCGGG 983 Query 37736 CGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGATGCGGCGTTGCCCTGAAA 37795 || |||||||||||||| ||||||||| | || || | |||||| || |||||| Sbjct 982 CGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAG 923 Query 37796 CTGGATCTGGTGGCGAATCCGGGACAGCTTGAACTGGATCGTCATGCCGCCCGTTCCGCA 37855 |||||||||| | | || | | ||| | | ||| | || ||||| ||| Sbjct 922 GTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCG 863 Query 37856 GCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGACCTGGTGCGCGTTACG 37915 |||||||| || | || | ||| || |||| ||| ||||||||||||||||||| ||| Sbjct 862 GCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACG 803 Query 37916 CAGATCATTAACGGAGGGCAGAACGGCATCGGTGACAGGCGAGAGCG 37962 |||||||| || || |||||||||||||||| ||| |||| | ||| Sbjct 802 CAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGTGCGCG 756 >seq4950 Length=777 Score = 185 bits (204), Expect = 2e-42 Identities = 210/281 (75%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 38077 CATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACC---GCCAGTCATAGT 38133 |||||||| || ||||||||| || ||| | ||||| || | ||||| | Sbjct 272 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA--- 216 Query 38134 CTGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCC 38193 |||| ||||||||||| | | || | || ||| || ||||||||||||| ||||| || Sbjct 215 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 156 Query 38194 CTTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGC 38253 || |||| || ||| || |||||| | ||| ||||||||||||| ||||||||| |||| Sbjct 155 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 96 Query 38254 GATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCG 38313 |||| ||| |||||||| |||||||| ||| | |||| || ||||| ||||| Sbjct 95 GATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTG--- 39 Query 38314 ACAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGC 38354 || || ||||| ||||| || |||||||||||||||| Sbjct 38 ---CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGC 1 >seq98 Length=166217 Score = 170 bits (188), Expect = 5e-38 Identities = 438/665 (66%), Gaps = 14/665 (2%) Strand=Plus/Minus Query 10338 GACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCCGGTCAGATGATG 10397 ||||| | ||| ||||| ||||| || || |||| || |||||| | || |||| ||| Sbjct 120497 GACGCGGCGAAGATGGGCGTGGCCTTCGACACCAGCGCTGAAGAGGCGGGCCAGACCATG 120438 Query 10398 GCGCAGTGGCGGACAGCGTTCAGACTGACGCAGGAAGACGTGGTTGTCCTGGCCGATAAA 10457 || ||||| || || |||| || ||||| |||||||| || |||||||| || Sbjct 120437 GCCACCTGGCGCACCGCCTTCAAGATGGGCCAGGACGACGTGGTCGTGCTGGCCGACAAG 120378 Query 10458 ATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAAATTTCTGATATCGTGACG 10517 |||||||| ||||| || ||||| || || | | |||| || || | |||| Sbjct 120377 ATCAACTACCTGGGCAACACCGGTCCCGCCAGCGTCCAGAAGATCAGCGAGGTGGTGAAC 120318 Query 10518 CGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATTGCCGCGATGGGC 10577 || || || |||| || | || || || ||| ||| | |||||| ||||| Sbjct 120317 CGCATCGGCGCGCTCGGTGAGGTGGCTGGCCTGGGCAGTGGCCCGCTGGCCGCGCTGGGC 120258 Query 10578 GCCACCATTGCCGGGATGGGGGTTGAATCGGAGATAGCCTCCACCGGCATCAAAAACTTC 10637 |||||| | ||||| ||||| | || |||||| | | ||||||||||||| ||| | Sbjct 120257 GCCACCGTGGCCGGTATGGGCATCGAGTCGGAGGTGTCTGCCACCGGCATCAAGAACATG 120198 Query 10638 ATGCTGTCGTTAACCGCAGGTAATTCGGCAACCAAAGCCCAGAAACAGGCTATGGCTTTC 10697 |||| | | || | || || |||| |||| ||| ||| | ||||||| Sbjct 120197 CTGCTTACCCTGTCCTCGGGCGATGCGGCGACCA------AGAGCCAGCTCACGGCTTTC 120144 Query 10698 CTGAAG------CTGAATCCCCGGAAACTCGCTGAGGATATGCAAAAGGATTCGCACGGG 10751 |||| || || || | | | || | | ||||| ||||| | |||| Sbjct 120143 AAGAAGCTTGGCCTCAACGCCAAGGACATGGCCAACGCCATGCAGAAGGACGCCGGCGGG 120084 Query 10752 GCCATGCTGAAGGTGCTGGACTCGCTCGCGAAAG-TGCCAAAAGCTAAACAGGCCGCCGT 10810 ||||| || || |||| ||| | |||| |||| || || | |||||||| Sbjct 120083 GCCATCGTGGGCGTCTTGGAGAAGCT-GAAAAAGCTGCCCAAGGCCGAGCAGGCCGCGAC 120025 Query 10811 CATGAATGCGCTGTTTGGCAAGGAGTCACTTAGCGCGATTGCCCCGCTGCTGACCAACCT 10870 |||| ||||||||| ||||| | |||| || ||||||||||||||||| || Sbjct 120024 GATGACCCAGCTGTTTGGGCGCGAGTCCATCGGCGCCATCGCCCCGCTGCTGACCAATCT 119965 Query 10871 GGATTTGTTACGCACCAATTTTGATCGTGTGGCTGATGCCCAGGAATATGGCGGCTCGAT 10930 ||| || | ||| || || || | || |||||| |||| || |||||||| Sbjct 119964 GGAGCTGCTGAAGGGCAACTTCGACAAGGTCACCGACGCCCAGAAATACGGTGGCTCGAT 119905 Query 10931 GCAGAAGGAATACGCATCCCGCGCGGCCACAACAGAAAACCAGCTGGTTCTGCTGAAAAA 10990 | || ||||| | || | |||||| |||| ||| |||| ||||| || || Sbjct 119904 GGGCGCCGAGTACGCCGCGCGTGTGGCCACCTCAGAGAACGCGCTGCAGCTGCTCAAGAA 119845 Query 10991 CAGCG 10995 ||||| Sbjct 119844 CAGCG 119840 >seq716 Length=76659 Score = 165 bits (182), Expect = 2e-36 Identities = 281/403 (70%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 8778 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 8837 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 24602 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 24661 Query 8838 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 8895 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 24662 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 24719 Query 8896 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 8955 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 24720 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 24779 Query 8956 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 9015 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 24780 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 24838 Query 9016 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTGG 9074 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 24839 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 24898 Query 9075 AGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 9134 |||| || | || ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 24899 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 24958 Query 9135 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 | | || ||||| || |||| |||||||||||| ||||||| Sbjct 24959 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTA 25001 >seq4719 Length=950 Score = 104 bits (114), Expect = 6e-18 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 38352 AGCCCGCCCCAGACTGGCAGACTCCGCTCAACGGGATTATTTCACCCTCAAAGAGCGAGT 38411 |||| |||| ||||||||||| ||||| ||||||||||||||||||||| |||| | | Sbjct 950 AGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCT 891 Query 38412 GACAACAATGCAAAAGCAACTGGAAGGGGCGCAGGACTATAT 38453 || || |||||||| ||||||||||| | ||| | ||||| Sbjct 890 GATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATAT 849 >seq846 Length=12855 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 28149 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGTCTTTTTAC 28208 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 7189 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 7248 Query 28209 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 28268 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 7249 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 7308 Query 28269 TATATCGACAAAAATAAGATCTCCGGGTTCAATTGTTGGTGCCATGCTGTCACCGCGCAC 28328 ||||| || || | ||||| || ||||| || ||| || |||||||||||||||||| Sbjct 7309 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 7368 Query 28329 GTTAAT 28334 |||||| Sbjct 7369 GTTAAT 7374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128339459400714