Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq16 125 1e-23 seq351 120 5e-22 seq724 116 7e-21 seq252 107 3e-18 seq1914 100 5e-16 seq155 95.1 2e-14 seq871 87.8 3e-12 >seq16 Length=55361 Score = 125 bits (138), Expect = 1e-23 Identities = 83/92 (90%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 ||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| || Sbjct 54041 TTTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTT 53982 Query 271792 GCTCTACCGACTGAGCTATCACGGAATTAAAT 271823 |||||||||||||||||||||||||| || || Sbjct 53981 GCTCTACCGACTGAGCTATCACGGAACTACAT 53950 Score = 105 bits (116), Expect = 1e-17 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 273264 ATTAAA-ATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCG 273322 |||||| |||||||| || ||| || |||||||||||||||||||||||||||||||||| Sbjct 54473 ATTAAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCG 54414 Query 273323 CGCTACC-AACTGCGCTACACTCCG 273346 ||||||| ||||||||| || ||| Sbjct 54413 CGCTACCGGACTGCGCTATACCCCG 54389 Score = 100 bits (110), Expect = 5e-16 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 54123 AATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 54064 Query 273327 ACC-AACTGCGCTACACTCC-GTATTTAAATTGG 273358 ||| ||||||||| || || || || ||||||| Sbjct 54063 ACCGGACTGCGCTATACCCCGGTTTTGAAATTGG 54030 >seq351 Length=183164 Score = 120 bits (132), Expect = 5e-22 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 124280 ATGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAAC 124339 Query 272931 CAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||| Sbjct 124340 CAACTGAGCTATAGGCCCT 124358 >seq724 Length=120926 Score = 116 bits (128), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 |||| || ||||||| ||||||||||||||||||||||||| ||||||||||||| || Sbjct 35340 TTTACTATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTT 35281 Query 271792 GCTCTACCGACTGAGCTATCACGGAAT 271818 |||||||| ||||||||||| |||||| Sbjct 35280 GCTCTACCAACTGAGCTATCGCGGAAT 35254 >seq252 Length=177545 Score = 107 bits (118), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272870 TATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAA 272929 ||| ||||||||||| || || ||||| ||||||||| ||||||||||| ||| |||||| Sbjct 84449 TATAGTGGGCCCAGCTGGGCTCGAACCAGCGACCAAGAGATTATGAGTCTCCTACTCTAA 84390 Query 272930 CCAACTGAGCTATAGGCCC 272948 ||||||||||||||||||| Sbjct 84389 CCAACTGAGCTATAGGCCC 84371 >seq1914 Length=11218 Score = 100 bits (110), Expect = 5e-16 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320 ||| |||| |||||||| || || || ||||||||| |||||||||||||||||||||| Sbjct 105 ATTTTTAATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGG 164 Query 273321 CGCGCTACC-AACTGCGCTACACTCCG 273346 ||||||||| ||||||||| || ||| Sbjct 165 CGCGCTACCGGACTGCGCTATACCCCG 191 >seq155 Length=27654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 273330 ||||||| || | | || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 10415 TGGTCGGGGTAGAGGGATTCGAACCCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 10474 Query 273331 -ACTGCGCTACACTCCG 273346 ||||||||| || ||| Sbjct 10475 GACTGCGCTATACCCCG 10491 >seq871 Length=11941 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||| ||||| | |||||||| ||||||| |||| |||||||| Sbjct 9550 ATGGTGGGCCCGGAGGGACTCGAACCCCCAACCAAGCGGTTATGAGCCGCCGGCTCTAAC 9609 Query 272931 CAACTGAGCTATAGGCCC 272948 ||| ||||||| |||||| Sbjct 9610 CAATTGAGCTACAGGCCC 9627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896825016154480