Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004687.1 Length=156102 Score E Sequences producing significant alignments: (Bits) Value seq3559 93.3 4e-14 seq29 93.3 4e-14 seq340 89.7 5e-13 seq9125 87.8 2e-12 seq3096 87.8 2e-12 seq375 84.2 2e-11 seq2070 82.4 8e-11 >seq3559 Length=12351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 116616 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116675 || |||||||||||||| | | || ||| ||||| | |||| ||| |||||| Sbjct 3516 GGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGATCACCGAC 3575 Query 116676 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 116735 ||||||| || | ||| |||||| ||||||||||| ||||||| ||||| | | Sbjct 3576 CTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCGTGTCTCC 3635 Query 116736 TTCCCCGACATCGACGTCGACTTC 116759 | |||||| |||||||||||||| Sbjct 3636 ATGCCCGACTTCGACGTCGACTTC 3659 >seq29 Length=97445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 94072 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 94131 ||||||||||| ||||| ||| |||||||| ||| ||||| ||| ||||||||||||| Sbjct 16047 ACGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGA 16106 Query 94132 ATCCTGTCACCCCGAC 94147 |||||||| ||||||| Sbjct 16107 ATCCTGTCTCCCCGAC 16122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 94073 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 94132 |||||||||| ||||| ||| |||||||| ||| ||||| ||| |||||||||||||| Sbjct 15833 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 15892 Query 94133 TCCTGTCACCCCGAC 94147 ||||||| ||||||| Sbjct 15893 TCCTGTCTCCCCGAC 15907 >seq340 Length=55687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 116615 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 116674 |||||| |||||||| |||| | ||||||||||| ||| | || |||||| Sbjct 6316 CGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGTGGCCTGGGCGCTGCAGATCACCGA 6375 Query 116675 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 116732 ||||||||||| |||| ||||| |||||||||| || ||||||| || ||| | Sbjct 6376 TCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCGGTTCCTCAACCCCGAACGCGTGTC 6435 Query 116733 GACTTCCCCGACATCGACGTCGACTTC 116759 || | |||||| ||||| |||||||| Sbjct 6436 GA--TGCCCGACTTCGACATCGACTTC 6460 >seq9125 Length=594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 152852 CGGCCTGCTGCAGCGCAAGGGCCTGATCGAGGACCCGCAGATTCTCATCGCGGCCACCGG 152911 ||| |||||||| |||||||| || || ||||||||||| ||| | | ||| Sbjct 29 CGGGCTGCTGCAACGCAAGGGATACGCGGATGATCCGCAGATTCTGTTCGGTGGTATCGG 88 Query 152912 TGATGCCAACAGCGACCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCCGACAACCGCAT 152971 || ||| | ||| | |||||| || || ||||||||||||||||| | ||| || Sbjct 89 CGACGCCGATTCCGATCAGGTGCCACTACAAGTCGGCCAGTTCGAGTCGGGTAACGCGAT 148 Query 152972 CGACG-CCATGATCGAGGCCATGTACCTCGAAGGCTTCGGGGGCGGGCAGGCACACGAGA 153030 |||| || ||| | |||| | |||||| ||| ||| || || ||| || | Sbjct 149 GGACGAGCAGCTTCG-GACCATCTTCCTCGAGGGCAACGGTGGTGGACAGAAGTCGGAAA 207 Query 153031 CCTACGAGCTCGCGGCCTACTTCCTGGCCCGGCACACC--TACCTGGAGCCGTGGCACAA 153088 ||| || | || || || ||| |||| || |||||| ||| ||| | ||| | || Sbjct 208 GCTATGAATTGGCAGCATATTTCATGGCGCGCCACACCAGTAC--GGATGCCTGGGAGAA 265 Query 153089 GCAGGGGCGCAAGGGCTATGCCATCTTCATCGGTGACGAG 153128 || || | || ||||| | || ||||||| |||||| Sbjct 266 GCGCGGAAGGAAAGGCTACCTCTTCATCATCGGCGACGAG 305 >seq3096 Length=9392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 94072 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 94131 ||||||||| | ||| |||| || |||||| ||| ||||| |||| ||||||||||| | Sbjct 5388 ACGGGGTGTGGCGCAGCTTGGTAGCGCGCTTCGTTCGGGACGAAGAGGTCGCAGGTTCAA 5329 Query 94132 ATCCTGTCACCCCGAC 94147 |||||||||||||||| Sbjct 5328 ATCCTGTCACCCCGAC 5313 >seq375 Length=82088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 116607 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 116666 |||| ||| ||||| ||||| || |||| || || |||||||| | |||| ||||| Sbjct 20612 TGCCCGTG-GGCCCCGGCCGGGGTTCCGGCGCCGGTTCGCTGGTGGCGTACGCGCTGGGC 20554 Query 116667 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGAC 116726 || ||| | ||||||||| |||||| || ||||||||||||| | || || || Sbjct 20553 ATTACCGACCTGGACCCGATCCGCTACGACTTGCTGTTCGAGCGCTTCCTGAATCCCGAG 20494 Query 116727 CGCCCCGACTTCCCCGACATCGACGTCGACTTC 116759 || | | | |||||| |||| |||||||| Sbjct 20493 CGGGTCTCCATGCCCGACTTCGATATCGACTTC 20461 >seq2070 Length=16073 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 94070 CCACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTC 94129 || ||||| |||| ||||||||| ||||||| | ||||||| | || ||||||||||| Sbjct 3201 CCCCGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTC 3142 Query 94130 GAATCCTGTCACCCCGACTCAGC 94152 | ||||||| ||||||| |||| Sbjct 3141 AACTCCTGTCGCCCCGACACAGC 3119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499333933909040