Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq8755 185 6e-42 seq5676 154 1e-32 seq355 109 4e-19 seq64 104 2e-17 seq4407 93.3 3e-14 seq59 93.3 3e-14 seq1369 91.5 1e-13 >seq8755 Length=560 Score = 185 bits (204), Expect = 6e-42 Identities = 203/270 (75%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 99219 GATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACTGG 99278 ||| ||| | |||| || |||||||||||| || ||| | | | | ||| |||| || Sbjct 284 GATTTCCTCGTCGGTGATGAACGCGCCCTGCATACGGGTCGGCTTACCCGCGCCCATGGG 225 Query 99279 CAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCAC 99338 ||| || | ||||||||||| || ||||| | |||||| ||| || || ||||| || Sbjct 224 CAGGAACAGGCCGTCACCCATACCGATGAGCTTCTCGGCGCCGGGCTGATCGAGGATGAC 165 Query 99339 CCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGAT 99398 || || || || || | || ||||||| ||| ||||| ||||||||| ||||||| Sbjct 164 TCGCGAGTCCGTCAGTGAAGACGTCGCGAACGCCAGACGCGAAGGCACGTTGGTCTTGAT 105 Query 99399 GAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGC 99458 ||||| || || || || ||||| || |||||||| ||||| || || || || ||||| Sbjct 104 CAGGCCGGTGACGACGTCGACGGACGGGCGCTGCGTTGCCAGCACCAGGTGGATACCGGC 45 Query 99459 CGCACGCGCCTTCTGCGCGATGCGGACAAT 99488 ||||| || ||||||| ||||||||| || Sbjct 44 AGCACGGGCTTTCTGCGTGATGCGGACGAT 15 >seq5676 Length=789 Score = 154 bits (170), Expect = 1e-32 Identities = 181/241 (75%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 99691 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAG 99749 ||||| |||||||| | |||||| ||||||||||| ||| ||||||||||| | ||| | Sbjct 70 AGGTGCGGGATACCTTCGTACGGCGTGAGCTCGAC-CATCTTGGGGTCGATGAGGATCAT 128 Query 99750 TTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCT 99809 || || || || || ||| ||||| ||| || ||||| ||||| | |||||| Sbjct 129 CCGTACTTCTTCCGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCT 188 Query 99810 GGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAG 99869 ||||| || || ||||| | || |||||||| |||||||||||||| || |||||| Sbjct 189 CGACTTACCGGAGCCGGTGGAACCTGCCACCAGGAGATGCGGCATCTTCGCGAGGTTCGC 248 Query 99870 GGAGATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATG-GTCGTCTT 99928 | || | ||||| |||||||||||||||| | | |||| |||||| || |||| Sbjct 249 GATGACGATGTTGCCGCCGACGTCCTTGCCCACGCCGATCGTCATCGGATGCGTGCTCTT 308 Query 99929 C 99929 | Sbjct 309 C 309 >seq355 Length=98473 Score = 109 bits (120), Expect = 4e-19 Identities = 232/338 (69%), Gaps = 19/338 (6%) Strand=Plus/Minus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGCG--CTGCGCGCCCCCACTGGCAGAAAT 99285 ||||||||||||||||| || | ||||| ||| ||| | ||| |||| | Sbjct 86500 TCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTG---GTGCCCGGCGGCATGTAG 86444 Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345 | | |||||| |||| ||||||||||| ||||||| ||| | ||| |||| | Sbjct 86443 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86384 Query 99346 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 99402 ||| | | ||| | ||| |||| || || | || | |||| |||||| ||| Sbjct 86383 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86327 Query 99403 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 99462 || || | ||| ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86326 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86267 Query 99463 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 99520 ||||||||||| ||||| ||| | || ||| | || ||| |||||| | | || Sbjct 86266 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 86212 Query 99521 TCATGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558 |||| | || || | ||| || ||||| ||||||||| Sbjct 86211 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86174 >seq64 Length=260832 Score = 104 bits (114), Expect = 2e-17 Identities = 136/184 (74%), Gaps = 11/184 (6%) Strand=Plus/Plus Query 99387 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 99446 |||| |||||| ||||| || | ||| |||||| ||| || ||||||||||||| | Sbjct 1269 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGTTGCGTCGCCAGGATCAA 1328 Query 99447 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCT 99504 ||| ||||||||||||||||||||||| || | |||| | || ||| | || | | Sbjct 1329 ATGGATGCCGGCCGCACGCGCCTTCTGGGCCAGGCGGGCGATCAGTT--CTTCGATC--- 1383 Query 99505 TTCTTGTAGCCAC--CCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGG 99562 |||||| |||| ||||||| || || || || || || | || ||||||||| || Sbjct 1384 TTCTTG--CCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATGGTGG 1441 Query 99563 GGAG 99566 | || Sbjct 1442 GCAG 1445 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 99762 AGGGGTCGCCCG-GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCG 99820 ||| |||| || |||||||||||| | | ||| | |||||| | ||||||||||| Sbjct 1727 AGGCGTCGGCCTTGTAGAGCAGCGACAGGATCATGGCGTTGATCCCGACGGACTTGCCCG 1786 Query 99821 ATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCC- 99879 | ||||||| ||| ||||||||||| || |||||||| ||||||| || | || Sbjct 1787 AGCCGGTCGTGCCCGCCACCAGCAGGTGGGGCATCTTGGCCAGGT---CGGCCACCACCG 1843 Query 99880 --TTGCCCTCGACGTCCTTGCCCACTGCCACGGTCA 99913 ||||| | | ||||||||||| |||| ||||| Sbjct 1844 GGTTGCCGGCAATGTCCTTGCCCAGCGCCATGGTCA 1879 >seq4407 Length=7959 Score = 93.3 bits (102), Expect = 3e-14 Identities = 191/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 99638 || ||||||||| ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 276 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 220 Query 99639 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 99698 ||| ||||| | || |||| | | || || || |||||| ||| || || || Sbjct 219 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 160 Query 99699 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 99757 || |||| || | || || | ||| || || ||||||||||| || | | Sbjct 159 AATGCCGTCATAGATCGACAGTTCCAG-CATCTTCGGATCGATCATGATCAGGCGGCACT 101 Query 99758 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 99817 | || |||||| ||||| |||||||| | | ||| | ||||||| ||| || | Sbjct 100 GTTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTAC 41 Query 99818 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTT 99857 |||| ||||| | || || |||||||||||||||||||| Sbjct 40 CCGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTT 1 >seq59 Length=142688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 99381 GGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAG 99440 ||| | |||| |||||| ||||| || | ||| ||||| || || ||||| || ||||| Sbjct 115942 GGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGGGTGGCCAG 115883 Query 99441 GACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGC 99476 || || || |||||||||||||||||||||||||| Sbjct 115882 GATCAGGTGGATGCCGGCCGCACGCGCCTTCTGCGC 115847 >seq1369 Length=6225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 202/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Minus Query 99585 GCGCACGCC-AGCCTCCTG-CATCTGCCGGTATCGGTCGTCCATCTC---TACGGTGAGC 99639 ||||||||| ||| | || ||||| |||||| ||||| ||||| || ||| | | Sbjct 5797 GCGCACGCCCAGCTT--TGACATCTTCCGGTAACGGTCTTCCATTTCGCGTACCGC---C 5743 Query 99640 CACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGG 99699 ||| ||||| | ||||||| | | || || || || || || ||||| || Sbjct 5742 CACTTCAGCGCCATGACCGCCTTTTTCGGGTCGGTCACAACAGGGGTAAGCAGGTGCGGA 5683 Query 99700 ATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGTTTGACCCGA 99759 ||||||| || | || || | ||||||||||| |||||| || | | Sbjct 5682 ATACCGTCATAGATCGACAGTTCTAGCATTTTGGGGTCGACCATGATCAGGCGGCACTCT 5623 Query 99760 TCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCC 99818 || || ||| |||||| ||||| || | | ||| | |||||| | | | | ||||||| Sbjct 5622 TCCGGCGTCAGCCGGTAAAGCAGTGACAGGATCATGGTGTTGATCGCAACCG-ACTTGCC 5564 Query 99819 CGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA 99872 ||| || || | || || |||||||||||||||||||| || | |||||| || Sbjct 5563 CGAACCCGTTGTACCGGCAACCAGCAGATGCGGCATCTTGGCGA-GTTCAGCGA 5511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354598564496022