Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1971 96.9 3e-15 seq374 93.3 3e-14 >seq1971 Length=9940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || |||||||| ||| || | | |||| || | || Sbjct 4118 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTG 4059 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | || | ||| ||||||||| || ||||| || ||||| || || Sbjct 4058 CTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 3999 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| || | || ||||||||| || || || | ||| ||||| || || || Sbjct 3998 GGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGT 3939 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATT--TTAAT 15384 ||| || || || |||||||||||| || |||| | |||| ||||| Sbjct 3938 CAGGGTCTTGACGAAAATTTGCATAGTT-AAAAGATAATTAATTAAT 3893 >seq374 Length=102525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || ||||||||||| ||| | | |||| || | || Sbjct 623 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGC 564 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | ||| ||||||||| ||||| || || ||||| || || Sbjct 563 TTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTT 504 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| || | || ||||||||| || || || || |||||||| || || || Sbjct 503 GTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTG 444 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| |||||||||||| Sbjct 443 AGAGTCTTTACGAAAATTTGCATA 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362133616012707