Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq98 282 9e-72 seq353 111 3e-20 >seq98 Length=166217 Score = 282 bits (312), Expect = 9e-72 Identities = 981/1501 (65%), Gaps = 41/1501 (3%) Strand=Plus/Minus Query 1288 CAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGG-CTTCCTCGCTGCGGCTGG 1346 |||||| |||| |||||| || || |||||||||| || | | | || ||| | | Sbjct 136984 CAGGGCATGCAGCAGCGCCCACGCCAGATCGGCGTGGCCGGTCGTGCGCGA-GCGCCCCG 136926 Query 1347 CCTCATAGGTGGCGCTG-CGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAG 1405 || ||||||| ||| || |||||| || ||||||| |||| || | | ||| Sbjct 136925 CCGTGTAGGTGGT-CTGTCGGCCGCTGGCCGTGCTGGTCTTCTGGATGGCAAGCAGCGAC 136867 Query 1406 CTGGTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATGACGTCTTTT 1465 ||| |||||||| || | ||||||||||||||| | |||||| || Sbjct 136866 TGGGTCATGTCGGTCCAGCCGGCGTCATATTCCAGACGCTCGTTCTTGATGACATCGAAC 136807 Query 1466 GCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGCG-CGGCGGG 1524 ||||||||||||| || |||| || |||| ||||| || | | | |||| Sbjct 136806 GCCTTGAGCACCAGCCGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGGTCAACCCCGGG 136747 Query 1525 ATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGAT 1584 | ||||| ||| || |||||| ||| ||| || | ||||||||| || || ||||| Sbjct 136746 A-AGAACTGGCGGACCAGCTGGGCCACACCGGTGCCCATGCCGGTGGCGTCGATCCCGAT 136688 Query 1585 GTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAGTC 1644 ||| ||| ||| | ||||| || |||| | ||||||| || ||||| Sbjct 136687 GTAGGTGACCCAGTAGCGCTGGGTGACCTTCTGGATAAACGCCGCCTGGTCAGCGAAGTC 136628 Query 1645 CATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGG 1704 |||||| || ||||||||||||| || | | ||| |||||||||| ||| ||||| Sbjct 136627 CATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACTTGGGGCGG 136568 Query 1705 TGCCAGTACCACGCATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCAATCCAGAC 1764 |||| | |||| |||||||||||||| | | ||||||||| |||||||| || Sbjct 136567 CGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCAATCCACAC 136508 Query 1765 CGGGCGGGAGCCGAACG---GATTGGCGGCAAACGGCGCA--TAGTCTTCCCA-TTCTTC 1818 || |||| ||| | | | ||||| || ||| | | | | |||| | | | Sbjct 136507 CGCGCGGTCGCCATATGGGCGCATGGCG--AAGGGGCTGAACTCGCCGGCCCACTCCACC 136450 Query 1819 CAGCGTGTCGACCATGCAGCGTTGCAGC-TCCTCGAACGGGAATACCGACGCCTTGTCGT 1877 |||| |||| ||| ||| | |||||| || || | |||||| || || |||||| Sbjct 136449 CAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGCTGTCGT 136392 Query 1878 CAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCT 1937 | || || || ||||| | |||||| || || |||||||||| ||||| |||| Sbjct 136391 CCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGTAATCGCGCCGCAGCT 136332 Query 1938 GCTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCC 1997 | | ||||||| ||| || | | ||||| | ||||| ||||||| Sbjct 136331 CGGCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGATCTGCC 136272 Query 1998 GCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATTT 2057 |||| ||||| | ||| | | || | | | || | || ||||| |||| | Sbjct 136271 GCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACATCGA--T 136214 Query 2058 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGAT 2117 | | | | | | | | ||| | ||| ||| || | || || | |||||| | Sbjct 136213 CGATACCTGCTGGGAGGTCGGCTTG-CCCTTGTTGAAGCGCTCGCCTGTCCAGAAATCGT 136155 Query 2118 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 2177 |||| |||||||||| ||||| || ||| ||| |||||| |||| | | || Sbjct 136154 AGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTCTTGTGCA 136095 Query 2178 AGGCCATACCTGATGCCACCTTACGCAG-TACCTGAAAATTCGGGATCCAGAAAATCTCG 2236 ||||| || || ||||| ||| | |||| || ||||||| | ||| Sbjct 136094 TCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAGCCGTAGG-TCCAGAAGAATTCG 136036 Query 2237 TCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATC 2296 |||| ||| | | |||| | || ||| |||||| | ||||||||| ||||| | | Sbjct 136035 TCGAAGTAGAAATTCCCGTGGTAGCCCTGCGCGGTGCGTGCGTTGGTGCCCAGAAAGAAC 135976 Query 2297 AGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGC 2356 || | |||||| ||| ||||||| || || || ||||| ||||| ||| | || | Sbjct 135975 AGCTCAGCGCCG---TTGGCCAGGACGATGGGATCGCCGGTGAGGTCCCGGTCCAGCACC 135919 Query 2357 -CGGGCA--AAGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGAC 2413 || ||| ||| | ||||| | |||| | | |||||| | || || | Sbjct 135918 TCGCGCACGAAGCCACGCATGTAGCCCAGGAAGATGTGCGCCTGACTCTTGGATGCGCTC 135859 Query 2414 AGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAA 2473 || || ||||| || | ||| | |||| ||| | |||||||||||||| ||| || Sbjct 135858 AGGAAGATCTGATTGCGGCCGCTGATCAGCGCGTCGATCAGCGCCTCGCGGGCAAAGTAG 135799 Query 2474 AACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCG 2533 | || ||||| ||||| || || || ||||| |||| | | |||| |||||| Sbjct 135798 TAGGTGGCGCCGATCTGCCGCGACTTGAGGATCACGCGCGTCC---GCTCGCTGCCGGCG 135742 Query 2534 CGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCG 2593 || ||||| | ||| || ||||| || || | ||| ||| |||| ||| Sbjct 135741 CGGTACCAATCGCGCTGGTAATCGAAGCACCCGTCGAGGAACGCCTGGCGCAGCCGTTCC 135682 Query 2594 ATGGCCTCGTCACTGAAAAAATTCTTTTTCGG----TTTGCGACGCCCGCCTTTGTTGCG 2649 | |||| || ||||| ||| || ||| | | | || ||| |||||| Sbjct 135681 ACTTCCTCTTCGCTGAACTCGTTC--TTGCGGGCCTTCTTCTTCG--GGCCAGCGTTGCG 135626 Query 2650 GTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACT-GTAACGGTTGACCC 2708 ||| ||||| || || ||||| ||||||||||| | | || |||||| | || | Sbjct 135625 GTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCC-GCCGCCCTGGTAACGCTGGATGC 135567 Query 2709 GTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTT 2768 | ||| | || || | ||| || |||||||| || || |||||||| |||||||| | Sbjct 135566 GGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGCCGGTCT 135507 Query 2769 T 2769 | Sbjct 135506 T 135506 Score = 264 bits (292), Expect = 2e-66 Identities = 761/1155 (66%), Gaps = 47/1155 (4%) Strand=Plus/Minus Query 15842 GACTATCATCACGGCGTGCAGGTGCTGGAGATTAACGAGGGCACCCGCGTCATTTCCACC 15901 |||||||| |||||||| | || | ||||| |||| || |||| || ||| Sbjct 123814 GACTATCACCACGGCGTACGTGTCATCGAGATCAACGGCGGTGTCCGCCCGATCCGTACC 123755 Query 15902 GTATCCACCGCCATTGTTGGCATGGTCTGCAC-GGCCAGCGATGCGGATGCGGAAATCTT 15960 | |||||||| | | ||||| || ||||| ||| || ||||| || || | || Sbjct 123754 ATCGCCACCGCCGTCATCGGCATTGTTTGCACCGGCGAG-GATGCCGACGCCACCCTGTT 123696 Query 15961 CCCCCTCAATAAACCGGTACTGATTACCAATGTGCAGAGTGCAATTGCAAAGGCCGGTAA 16020 ||| ||||| |||||| ||| | || | |||| | | || |||| ||||| || | Sbjct 123695 CCCGCTCAACCGACCGGTGCTGCTGACTGACGTGCTGGGGGCTATTGGCAAGGCTGGCAC 123636 Query 16021 AAAAGGCACGCTGGCGGCGTCGTTGCAGGCTATCGCCGACCAGTCAAAACCGGTCACCGT 16080 ||||| ||| | |||||||||| || ||||||||| | || | |||| || Sbjct 123635 CGCCGGCACCCTGCGCCCCACGTTGCAGGCCATTGCCGACCAGGCTAACGCCATCACGGT 123576 Query 16081 TGTCGTACGTGTGGAAGACGGCACCGGCGAAGACGAAGAAACGAAACTCGCGCAGACCGT 16140 || || || |||| || ||| | ||||| | || || |||| Sbjct 123575 CGTGGTGCGCGTGGCCGAGGGC------GTGGACGAC--AGCGCCACC-------ACCG- 123532 Query 16141 TTCCAATATCATCGGCACCACTGACGAAAACGGTCAGTACACCGGACTGAAGGCCCTGCT 16200 ||||| |||| || | | |||| || | |||||||| ||| |||| ||||| Sbjct 123531 --CCAATGTCATTGGTAAGAAGGACGGTG-CGACC--TACACCGGCCTGCAGGCGCTGCT 123477 Query 16201 GGCGGCAGAGTC---GGTAACCGGTGTTAAACCGCGTATTCTCGGCGTGCCGGGACTGGA 16257 || | | || | ||| ||| || ||||| || ||||||| |||||||||||| Sbjct 123476 GGTGTCCGAAGCCCAGGT---CGGGGTACGGCCGCGGATCCTCGGCGCGCCGGGACTGGA 123420 Query 16258 CACCAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGCTTTCGGGTA 16317 |||| | |||| | | ||| ||||| || |||||||||| || | | || Sbjct 123419 CACCCAGCCGGTGACCGCTGCCCTGGCCGTGATCGCCAAGAAGCTGCGGGCCATGGCCTA 123360 Query 16318 TATCAGCGCATGGGGCTGTAAAACCAT----TTCCGAGGTGAAAGCCTACCGCCAGAATT 16373 ||||| | |||| | | | | |||||| | || |||||| | | | Sbjct 123359 CGTCAGCT----GCGCTGCCAGCGCCTCGGTTCCCGAGGCCATCGCTTACCGCGCGCAGT 123304 Query 16374 TCAGCCAGCGTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGTCGCCA 16433 ||||| | || ||||||||| | ||| || || ||| | || | | || | || Sbjct 123303 TCAGCGACCGCGAGCTGATGTTGCTCTATCCCGACTTCGTGGCCTTCAACACCGCCGATG 123244 Query 16434 GTACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGCGCTAAAATCGACC 16493 ||||||| || || | || || || |||||||| || |||||||| | ||||| Sbjct 123243 CGACCACCGGCATGGCCTTCGCAACGGCACGTGCGCTCGGCCTGCGCGCCATGATCGATG 123184 Query 16494 AGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCA 16553 || |||| ||||||||||| ||||||||||||| | || ||| || |||||||||| Sbjct 123183 AGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCA 123124 Query 16554 GCGCGTCCGTATTCTGGGATTTGCAGGAGTCCGGC-ACCGATGCTGACCTGCTTAACGAG 16612 || | ||| ||||| ||||||| |||||| ||||| || | | |||| || | Sbjct 123123 GCCGGGACGTCCATTGGGACCTGCAGGA-TCCGGCGACCGACGCCGGCATGCTCAATGCC 123065 Query 16613 TCAGGCGTCACAACGCTGATTCGCCGTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGC 16672 | | |||| |||||||| | |||| | | |||||||| || |||||| Sbjct 123064 GCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGCACCTGC 123005 Query 16673 TCTGATGATCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGAC 16732 ||||| |||||||| ||| || | || ||||||||| |||||| | ||||||||| Sbjct 123004 AGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGAC 122945 Query 16733 ACGATGGCTGAGGCGCACATGTGGGCGGTGGACAAGCC-CATCACCGCAACGCTGATTCG 16791 || || || |||||||| || || |||||||| | |||| | ||||| | || Sbjct 122944 ACCATCGCCGAGGCGCAGTTGGTCTACGTCGACAAGCCGCTGCACC-CCTCGCTGGTGCG 122886 Query 16792 CGACATCGTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGT 16851 |||||| | || |||||||| ||||| ||||| |||||| | ||| || | | Sbjct 122885 CGACATGCTCGAAGGCATCAACGCCAAGTTCCGCGAGCTGGTGAACGCCGGATACCTGCT 122826 Query 16852 GGATGCGACCTGCTGGTTCAGCGAAGAGTCCAACGATGC---GGAAACCCTCAAGGCCGG 16908 | || || ||||| | ||| | ||||| ||| | | | || || || Sbjct 122825 CGGGGCCACGGCCTGGTACGACGAGGGCGCCAAC-CTGCCCACGCAGCTGTCCAG--TGG 122769 Query 16909 AAAACTGTATATCGACTACGACTATACCCCGGTGCCTCCTCTTGAAAATCTGACCCTGCG 16968 ||| ||||||| |||||| ||||||||||| || || ||||| ||| ||| Sbjct 122768 TCGCCTGGCCATCGACTTCGACTACACCCCGGTGCCGCCGCTGGAAAACCTGCTGCTGAA 122709 Query 16969 CCAGCGCATTACCGa 16983 ||||||||| ||||| Sbjct 122708 CCAGCGCATCACCGA 122694 Score = 91.5 bits (100), Expect = 3e-14 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 581 GGCATCGGTAACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGCG 640 || |||||| | ||| | |||| | ||||| || | |||||| | ||| |||||||| || Sbjct 137661 GGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCG 137602 Query 641 GAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAG 700 |||||||||||||||||| || ||| || | | | ||| | | || ||||| Sbjct 137601 GAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAG 137542 Query 701 GCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACAC 745 |||||||| |||||| | ||| | |||| |||| || |||| Sbjct 137541 GCCGTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 137497 >seq353 Length=102661 Score = 111 bits (122), Expect = 3e-20 Identities = 289/432 (67%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 335 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 394 |||| |||||| |||| | |||||||||||| || ||||| ||| | ||||| Sbjct 45064 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 45122 Query 395 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTTGCGACTTCACTGAG 454 || | |||| |||||||| || |||||||| | || || || || | Sbjct 45123 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 45182 Query 455 CGGGATAATTTTAATGCCGTCGGCTTTCC--CCTGTGGG-GCATAGAGAAACAGATTTTT 511 |||||| | | ||||||||| |||| |||| || || || | |||||| || Sbjct 45183 CGGGATGAGCTGAATGCCGTC---TTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 45239 Query 512 AAAGTTGTTGCGGCCTTTCGACTTCACCA-TGTTTTCGCGAAGCATTTCGATATCGTTGC 570 ||||||| | |||||||| ||| || || | ||| || ||||| || | Sbjct 45240 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 45298 Query 571 GATCCTGCACGGCATCGGTAACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAAT 630 | |||| | || ||||| | ||||| ||| | |||||||| |||||| | ||| | Sbjct 45299 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 45358 Query 631 ACTTGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AG 688 ||||||| |||||||||||||| ||| || ||| || || |||||| || Sbjct 45359 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 45416 Query 689 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACACGGA 748 | |||||||||||||| | ||||| || ||||| | ||| ||| ||| | | || Sbjct 45417 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 45476 Query 749 GCCGGGCGCGAA 760 ||||| || || Sbjct 45477 ACCGGGGGCAAA 45488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104454388860804