Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq3780 107 2e-18 seq170 95.1 1e-14 seq16 93.3 5e-14 seq351 89.7 6e-13 seq198 89.7 6e-13 seq6999 84.2 2e-11 >seq3780 Length=5724 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || ||||||| ||| ||||| || | || |||||||| || ||||||| || Sbjct 4318 TCGCCCGGCTGCAGCAGTGCCAGGAATACGGCCTGGTTCATCTGGCTGCCGGAATTCGGC 4377 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT-- 7103 || || || || | | ||| | ||||||| ||| || ||||| || ||||| |||| Sbjct 4378 TGCACATTAGCATATTCGCAGTTGAACAGTTTTTTGGCGCGCTCGATGGCCAG-TTCTTC 4436 Query 7104 --CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGC 7161 |||| |||| | ||||||||||||||| || ||||||||||| ||||| || Sbjct 4437 CGCGAT---ATCGACAAACTGGCAGCCGCCATAATAGCGCTTGCCCGGATAGCCCTCGGC 4493 Query 7162 ATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 ||| |||||||| | || || |||||||| Sbjct 4494 ATATTTGTTGGTCATGATCGAGCCCTGTGC 4523 >seq170 Length=203534 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 6901 GAAATCGTATATCTTGCCCGAAGCATTCGCTTTGTGC-CCGTGAGTGAGATGGCCGCCGC 6959 ||| | ||| | ||||||||| || || | ||| ||||| || || |||||||| Sbjct 131047 GAAGTTGTACAGCTTGCCCGAGGCGTTGACCGA-TGCGCCGTGGGTCAGGTGGCCGCCTT 131105 Query 6960 AGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCT 7019 | ||| | ||| | || || | |||||||||||||||| || ||| || ||| Sbjct 131106 CGGCCAGGCTCATGCCCAGCACGGTGTCACCCGGCTTCAGGACGGCCATGTACACGCCCT 131165 Query 7020 GGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAAT-TGCAACTAAACAGTTCT 7078 |||| ||||| || || || | || || ||||| ||| | || | ||| | || Sbjct 131166 GGTTGGCTTGCGAGCCCGAGTTGGGCTGCACGTTGGCGGCTTCGGCGCCGAAAATCTGCT 131225 Query 7079 TTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATAC 7138 | || || || || ||||| | ||||| | ||| | | | |||| ||||| || || Sbjct 131226 TCAG-GCGGTCGATGGCCAGTTGCTCGACCACGTCGACGTATTCGCAACCGCCGTAGTAG 131284 Query 7139 CGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 || ||||||||||| || || || |||||||| || Sbjct 131285 CGCTTGCCCGGATAGCCTTCGGCGTACTTGTTCGT 131319 >seq16 Length=55361 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || |||||| | ||| | ||| | || | | || |||| | | Sbjct 8882 CCGTGGGTCAGGTGACCGCCGTGGGCCAGGCTCATGCCCAGGATGGTGTCGCCCGCTTGC 8941 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || |||| || || ||| ||||| || |||| || || || ||||| ||| Sbjct 8942 AGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAGCCGGCGTGTGGCTGGACGTTGGCG 9001 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC---GATTTCATCG 7114 ||| | | |||||||| || || || || || ||||| | ||| ||| || || Sbjct 9002 TAATCGGCGCCGAACAGTTCCTTGGCGCGGTCGATGGCCAGTTGCTCAACGATGTCGACG 9061 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | |||| ||||| || || || ||||||||||| || || || ||||||||||| Sbjct 9062 AACT---CGCAACCGCCGTAGTAGCGCTTGCCCGGATAGCCTTCGGCGTACTTGTTGGTC 9118 Query 7175 AAAATAGAACCCTGTGCTTTCATAAC 7200 | || ||||| || || | ||| || Sbjct 9119 AGAACCGAACCTTGAGCCTCCATCAC 9144 >seq351 Length=183164 Score = 89.7 bits (98), Expect = 6e-13 Identities = 180/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 6907 GTATATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAA 6966 ||| | ||||||||| | | ||||| ||||| || || ||||||||| | ||| Sbjct 55416 GTACAGCTTGCCCGAGGACGACACTTTGGCGCCGTGGGTCAGGTGGCCGCCGTGGGCCAG 55357 Query 6967 GGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGC 7026 | ||| |||| | | || || | |||| || || |||| || || ||| || Sbjct 55356 GCTCATGCCGAGGATGGTGTCGCCGGCGTTCAACAGCGCCAGGTACACCGCACTGTTGGC 55297 Query 7027 TTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACG 7086 |||||||| || || || ||||| ||| ||| | || ||||| | || ||||| Sbjct 55296 GGACGAACCGGAGTGCGGCTGCACGTTGGCGTAATCGGCACCGAACAGCTGCTTGGCACG 55237 Query 7087 CTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCC 7146 ||| || || || |||| | || | | |||||||||| || || || ||||| Sbjct 55236 CTCGATGGCGAGCACTTCGACCTTGTCCACGTGCTCGCAGCCGCCGTAGTAACGCTTGCC 55177 Query 7147 CGGATATCCCTCAGCATACTTGTTGGT 7173 ||| || || || || ||||||||||| Sbjct 55176 CGGGTAACCTTCGGCGTACTTGTTGGT 55150 >seq198 Length=142842 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 6913 CTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACAT 6972 ||||||||| || || | ||| ||||| || || ||||||||| | ||| | ||| Sbjct 138616 CTTGCCCGACGCGTTGACCTTGGCGCCGTGGGTCAGGTGGCCGCCGTGGGCCAGGCTCAT 138557 Query 6973 AGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGA 7032 | || | | || ||||||| ||| || || ||| || |||||||| || || || Sbjct 138556 GCCCAGGATGGTGTCGCCCGGCTGCAGCAGCGCGAAGTACACCGCCTGGTTGGCCTGCGA 138497 Query 7033 ACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTT-CTTTAGCACGCTCAA 7091 |||| || || || ||||| ||| | | | | ||||| | ||| || || || | Sbjct 138496 ACCGCTGTGCGGCTGCACGTTGGCGTAGTCGGCATCGAACAGCTGCTTGAGG-CGGTCGA 138438 Query 7092 TTGCCAGGTTCTCG---ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCG 7148 | ||||| | |||| || || || | ||||||| || || || || ||||||| Sbjct 138437 TGGCCAGCTGCTCGGCGATGTCCACGTACT---CGCAGCCACCGTAGTAGCGCTTGCCCG 138381 Query 7149 GATATCCCTCAGCATACTTGTTGGT 7173 | || || || || ||||||||||| Sbjct 138380 GGTAGCCTTCGGCGTACTTGTTGGT 138356 >seq6999 Length=473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 67542 ATTTGGTGCCGATTGTCCGACTCGAACGGACCACCTGATGCTTACAAAACAACTGCTCTA 67601 |||||||||||| | | | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 243 ATTTGGTGCCGACCGCCGGTTTCGAACTGGCCACCTGATGATTACAAATCAACTGCTCTA 302 Query 67602 CCGGATGAGCTAAATCGGC 67620 || ||||||||| ||||| Sbjct 303 CCAAATGAGCTAAGTCGGC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555291509552920