Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq3870 129 9e-25 >seq3870 Length=345 Score = 129 bits (142), Expect = 9e-25 Identities = 212/302 (70%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 37997 TTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCA 38056 ||||| | || | ||| || |||| ||||| |||||||| ||||| |||||||||| Sbjct 326 TTTCA-CTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCACTCCA 268 Query 38057 GTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGTCTTTCA 38116 | ||||| || ||||| || ||| || | || ||| | || || | Sbjct 267 GCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCATCGCGAA 208 Query 38117 GAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTC 38176 ||||||||||||||||||||||||| ||| ||| | ||| || || || || | | Sbjct 207 TCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATAC 148 Query 38177 GAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGC 38236 | || ||||| |||||||||||| | ||||||||| ||||||||||| | Sbjct 147 GGTTACGCAGGATCGATTCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGACCAAAAC 88 Query 38237 CGAATG-TACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCG 38295 | || | |||| || || || |||||||| |||| ||| || ||||| || ||||| || Sbjct 87 CAAAGGTTACA-AACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCC 29 Query 38296 AG 38297 || Sbjct 28 AG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746124472222480