Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq64 284 5e-72 seq35 123 1e-23 seq2553 109 2e-19 >seq64 Length=260832 Score = 284 bits (314), Expect = 5e-72 Identities = 468/655 (71%), Gaps = 20/655 (3%) Strand=Plus/Minus Query 13541 TACGGAAGCGTGTGCAGCGGCATCGAGGCCGCGACCGTTGCTTGGCATCCGCTCGGC-TG 13599 ||||| ||||| ||||||||||||||||||| || | | || ||||| ||||||| | | Sbjct 159209 TACGGCAGCGTCTGCAGCGGCATCGAGGCCGTGAGCCTCGCCTGGCAACCGCTCGACCTC 159150 Query 13600 GAAGCCGGCGTGGTTCGCTGAGATCGAGAAATTCCCTAGCGCCGTGCTGGCGCATCATTA 13659 ||||||| |||||||||| ||||||||| ||||| ||||||||||| || || | ||| Sbjct 159149 GAAGCCG-CGTGGTTCGCCGAGATCGAGCCGTTCCCGAGCGCCGTGCTCGCCCACCGTTA 159091 Query 13660 CCCCGATGTTCCTAACCTTGGAGACATGACGAAGATCACGCGCGCGGTGCTGGCGCGTGA 13719 |||| || |||||||| || |||||||| |||| | ||| ||| | || | Sbjct 159090 CCCCCGCGTGCCTAACCTGGGCGACATGACCGCGATCGCCCGCCAGGTCCGCGCCGGCAC 159031 Query 13720 GGTCGAAGTGCCTGACGTGCTGGTCGGTGGCACGCCGTGCCAGGCATTCAGCCTCGCGGG 13779 || || ||| ||| | |||||||| ||||||||||||||| | |||||| | || || Sbjct 159030 CGTGCCAGCGCCCGACATCCTGGTCGGCGGCACGCCGTGCCAGTCGTTCAGCGTGGCCGG 158971 Query 13780 TCTGCGTGAATCCCTCTCGGATGAGCG-CG-GGAATCTT-ACTTTGAAATTCGTTGAGTT 13836 ||| | || | | || | || || ||| || | | || ||| | Sbjct 158970 CGCGCGCCAGGGGCT---GAACGACCCACGTGGTGCCTTGACCCTTGCCTATGTGGAGCT 158914 Query 13837 GATCGATGCAATTGACCATGTTCGGCGACTCGATGGCGCAGCACCGGCCGT--CG-TCGT 13893 |||| || ||||| || | | || ||| || ||||| | || |||| Sbjct 158913 TGCAAATGCCATCGACCAAACCCGCCACCAAGAC--CGCCGC-CCGGCGGCAACGCTCGT 158857 Query 13894 CTGGGAAAACGTCCCCGGCGTCCTCT-CGACAAAAGACAATGCGTTCGGGTGCTTTCTGG 13952 ||||||||||||||||||||||||| |||| || ||| || |||||| ||| |||| Sbjct 158856 CTGGGAAAACGTCCCCGGCGTCCTCAGCGACCGCAG-CAACGCCTTCGGGCACTTCCTGG 158798 Query 13953 CTGGGCTTGCCGGAGAA-GATGAGCCGCTGGTCGCACCAGGGGGCCGGTGGGCGAACGCT 14011 | || || |||||| | | || ||| | | |||||| |||||| |||| Sbjct 158797 GAGCACTGGCTGGAGAAAGCCGTGC-GCTCGAACCGCCAGGGCAAAAATGGGCGCACGCA 158739 Query 14012 GGTTGTGTGTATGGACCCCAGCGT-GCAGTCGCTTGGCGGACCCTGGACGCCCAATATTT 14070 |||||||||| |||||||| ||| ||| |||| ||||| || || || |||||||| Sbjct 158738 GGTTGTGTGTCTGGACCCCGGCGCCGCA-TCGCCTGGCGCGTGCTCGATGCTCAATATTT 158680 Query 14071 CGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAGTGGTCGAGACTGGTTCGA 14130 ||| || |||||||| ||||| || ||||| |||| ||||||||| ||| | |||| Sbjct 158679 CGGCGTCGCCCAACGGCGCCGTCGCGTGTTTCTTGTGGCAAGTGGTGGAGGTGGCGTCGA 158620 Query 14131 TCCCACACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGATTGTCCGCCGCGC 14185 |||| | ||||||||||||| | || ||||||||| |||||| | ||||| || Sbjct 158619 TCCCGCCGAGGTACTTTTTGAGCGCGACGGCGTGCGCGGGGATTCTTCGCCGGGC 158565 Score = 111 bits (122), Expect = 6e-20 Identities = 111/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 14418 TGGCGG-TGCGTCGCCTCATGCCTGTCGAGTGTGAGCGATTGCAGGAGTTCCCGGACGGC 14476 |||||| | ||||| || |||||||| ||||| ||||| |||| | | || |||| | Sbjct 157853 TGGCGGGTACGTCGGCTGATGCCTGTGGAGTGCGAGCGGCTGCAAGGCATGCCCGACGAC 157794 Query 14477 TACACCGATGTCCCGTATCACGGCGAGCCTGCTGCTGACGGTCCGCGCTACAAGGCGATC 14536 ||||| || ||||| | |||| |||| || || |||| || ||||||||||||||| Sbjct 157793 TACACGCTGGTGCCGTACCGCGGCAAGCCCGCCGCCGACGCGCCCCGCTACAAGGCGATC 157734 Query 14537 GGCAACAGCATGGCAGTGCCGTG 14559 |||||| |||||| |||||||| Sbjct 157733 GGCAACTCCATGGCCGTGCCGTG 157711 >seq35 Length=166930 Score = 123 bits (136), Expect = 1e-23 Identities = 233/334 (70%), Gaps = 13/334 (4%) Strand=Plus/Minus Query 10140 ATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGT 10199 |||||| || ||||| || ||| | || || ||| | || ||| || |||||||| Sbjct 116071 ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGC 116012 Query 10200 TACCTGCCGAGCGGCGACGCGGT-TGCGAACATCCGTC--TCGCGACGACCGATCGA--T 10254 ||| || ||| | ||| | ||| ||||| ||| |||| || ||| ||| | Sbjct 116011 TACAGCCCCGACGGGGCCGCAATCTGC-AACAT--GTCCATCGCCACCACC--TCGTCCT 115957 Query 10255 ACAAGGACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCT 10314 ||||||||||| |||||||| | || | || ||||||||||||||| | | Sbjct 115956 GGAAGGACAAGGCCAGCGGCGAGAAGCGCGAAGAAACCGAATGGCACCGCGTCGTCATGT 115897 Query 10315 TCGGTCGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCG 10374 || ||||| || |||| || ||| ||||| |||||| || |||||||||| Sbjct 115896 ATAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCG 115837 Query 10375 AGGGGCGCATCAAGACGCGGAAGTGGCAGGATCA--AT-CCGGCCAGGATCGTTACACGA 10431 | || || | ||||| || |||||||| || | || ||||| ||||| |||| | Sbjct 115836 AAGGCCGTCTGAAGACCCGCAAGTGGCAAGACAAGGATACCGGCGCCGATCGCTACAGCA 115777 Query 10432 CCGAGATCGTCGCTGACCGCATGCAGATGCTCGG 10465 |||| ||||||||||||| ||||||||||| || Sbjct 115776 CCGAAATCGTCGCTGACCAGATGCAGATGCTGGG 115743 >seq2553 Length=3545 Score = 109 bits (120), Expect = 2e-19 Identities = 232/343 (68%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 10136 AATAATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGT 10195 ||| |||||| || |||||||||||| | || || ||| | || ||||||||| Sbjct 2268 AATCATGGCATCAGTCAACAAGGTAATTATCGTCGGCAACCTCGGACAAGATCCTGAAAC 2327 Query 10196 CCGTTACCTGCCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCG-ATCGAT 10254 || ||| |||||| ||||| || || || |||||| | | ||||| |||| |||| | Sbjct 2328 TCGCTACATGCCGAATGGCGAAGCAGTGGCCAACATCAGCGTTGCGACTACCGAATCG-T 2386 Query 10255 ACAAGGACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCT 10314 || ||||| |||||||| | ||||| ||||||||||| ||| || |||||| Sbjct 2387 GGAAAGACAAAAACAGCGGCGAGAGGAAGGAAATCACTGAATGGCATCGCATCACGTTCT 2446 Query 10315 TCGGTCGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCG 10374 | | |||| || || | | || | || || || |||| || || |||| Sbjct 2447 ATCGCAAGTTGGCAGAAATAGCTGGTCAGTATTTGAAAAAAGGTTCATCGGTTTATATCG 2506 Query 10375 AGGGGCGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCG 10434 | || || | | || || || ||| ||| || ||| || || |||||||| | Sbjct 2507 AAGGCCGTTTGCAAACACGCAAATGGACAGATAAAGAAGGCGTTGAACGGTACACGACAG 2566 Query 10435 AGATCGTCGCTGACCGCATGCAGATGCT---CGGCAAGCCGGG 10474 | ||| | || ||| |||||||||| | ||||||||| || Sbjct 2567 AAATCATTGCAGACGCCATGCAGATGTTGGGCGGCAAGCCTGG 2609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204271887040221