Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq98 378 1e-100 seq353 134 3e-27 >seq98 Length=166217 Score = 378 bits (418), Expect = 1e-100 Identities = 1074/1619 (66%), Gaps = 31/1619 (2%) Strand=Plus/Minus Query 2012 AGAGGTTCGTTTAACAGGGCGTGCATGGTCGCCCATGCGATATCGGCGTGACTGG-CTTC 2070 || |||||||| |||||| |||| |||||| || | ||||||||| | || | | Sbjct 136998 AGCGGTTCGTTCTGCAGGGCATGCAGCAGCGCCCACGCCAGATCGGCGTGGCCGGTCGTG 136939 Query 2071 CTCGGTGCGGCTGGCCTCATAGGTAGCGCTG-CGCCCGCTGCTGGTCATGGTTTTGCGGA 2129 | || ||| | ||| ||||| | ||| || |||||| || |||| || ||| Sbjct 136938 CGCGA-GCGCCCCGCCGTGTAGGTGGT-CTGTCGGCCGCTGGCCGTGCTGGTCTTCTGGA 136881 Query 2130 TGGACATAAACGACTGCGTGACGTCGGTTGCCCCGGCGTCGTATTCCAGACAGCCGCGGC 2189 ||| | | |||||| || | |||||| |||||||| |||||||||| || Sbjct 136880 TGGCAAGCAGCGACTGGGTCATGTCGGTCCAGCCGGCGTCATATTCCAGACGCTCGTTCT 136821 Query 2190 GAATGGTGTCTTTCGCCTTGAGCACCATTGCGGTTTTCATTTCTGGCGTGTAACGGATAC 2249 ||| || |||||||||||||| || |||| || |||| ||| | || Sbjct 136820 TGATGACATCGAACGCCTTGAGCACCAGCCGCGTCTTCACCTCGGGCGAGTAGCTGAAGG 136761 Query 2250 CGCGAGCCGCCGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCTGTTG 2309 | | ||||| |||| || |||| |||| |||||| || | ||| || | Sbjct 136760 TGGTCAACCCCGGGAAGAACTGGCGGACCAGCTGGGCCACACCGGTGCCCATGCCGGTGG 136701 Query 2310 CGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCT 2369 |||| || |||||||| ||| ||| || |||| | | |||| | |||| Sbjct 136700 CGTCGATCCCGATGTAGGTGACCCAGTAGCGCTGGGTGACCTTCTGGATAAACGCCGCCT 136641 Query 2370 GCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCG 2429 | | || ||||||||||| || |||||||||||||||||| ||| ||||||||||| | Sbjct 136640 GGTCAGCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGG 136581 Query 2430 AAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCGT 2489 || |||||||| | | || ||||| |||||||| || | || |||||||| Sbjct 136580 GCACTTGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGT 136521 Query 2490 AGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGCGAA---GTCCT 2546 | |||||||| |||| ||| ||| |||| | |||||| ||| ||| | | Sbjct 136520 ACCCAATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGG 136461 Query 2547 CCCA-TGTTTCCATCACGTCGACCATGCAGCGCTGCAGC-TCCTCGAACGGGAATACAGA 2604 |||| | ||| | ||| ||| ||| |||||||| || || | |||||| || Sbjct 136460 CCCACTCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCT 136403 Query 2605 TGCCTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTC 2664 || | ||||| || ||||||||||| | |||||| || ||||| | |||| || Sbjct 136402 GGCGCTGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGTAATC 136343 Query 2665 GCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGT 2724 ||| | |||| | | | |||||||| ||| || | | | ||||| | || Sbjct 136342 GCGCCGCAGCTCGGCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGT 136283 Query 2725 GACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACT 2784 ||| ||||||||||| |||| |||| | | |||| | | ||| || ||| || Sbjct 136282 GACGATCTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCT 136223 Query 2785 GATGTCGATTTCGAT-GCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAG 2843 || |||| ||||| | | | || | ||| | ||||||||||| ||||||| | Sbjct 136222 GACATCGA--TCGATACCTGCTGGGAGGTC-GGCTTG-CCCTTGTTGAAGCGCTCGCCTG 136167 Query 2844 ACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCA 2903 |||||| || || ||||||||| |||||||| || ||||| || |||| Sbjct 136166 TCCAGAAATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCC 136107 Query 2904 GATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCC 2963 | ||| ||| |||||||| |||||| ||| ||||| | || | ||| Sbjct 136106 ATTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAGCCGTAGGTCC 136047 Query 2964 AGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAATTGGTGC 3023 |||| | ||| |||| || | | |||| | || |||||||||| | ||||||| Sbjct 136046 AGAAGAATTCGTCGAAGTAGAAATTCCCGTGGTAGCCCTGCGCGGTGCGTGCGTTGGTGC 135987 Query 3024 CGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCAGGTCGA 3083 | ||||| | ||||| ||||||||| ||| | ||| || || ||||| || ||||| Sbjct 135986 CCAGAAAGAACAGCTCAGCGCCGTTG--GCC-AGGACGATGGGATCGCCGGTGAGGTCCC 135930 Query 3084 CGTCAACCA-GTCGCGCA--AACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTT 3140 ||| | || ||||||| || ||||| || |||| | || ||||| | | Sbjct 135929 GGTCCAGCACCTCGCGCACGAAGCCACGCATGTAGCCCAGGAAGATGTGCGCCTGACTCT 135870 Query 3141 TACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGC 3200 | || ||| || ||||| || ||||| | | |||||| | ||| ||||||| Sbjct 135869 TGGATGCGCTCAGGAAGATCTGATTGCGGCCGCTGATCAGCGCGTCGATCAGCGCCTCGC 135810 Query 3201 GGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGTGCG 3260 ||| ||||||| | || ||||| ||||| || || ||||| || |||| | || | || Sbjct 135809 GGGCAAAGTAGTAGGTGGCGCCGATCTGCCGCGACTTGAGGATCACGCGCGTCCGCT-CG 135751 Query 3261 CCAGTCCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAATTTCTT 3320 | || || |||||||| | |||||| ||||| || ||||| ||| | Sbjct 135750 C--TGCCGGCGCGGTACCAATCGCGCTGGTAATCGAAGCACCCGTCGAGGAACGCCTGGC 135693 Query 3321 CCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTACGCTCCCCCT 3380 |||| | | || |||| |||||||| |||||| | | |||| | || Sbjct 135692 GCAGCCGTTCCACTTCCTCTTCGCTGAACTCGTTCTTGCGGGCCTTCTTCTTCGGGCCAG 135633 Query 3381 TGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCT-GTAGCGG 3439 ||| |||||||| || ||||| ||||| ||||||||||| | | || ||| || Sbjct 135632 CGTTGCGGTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCC-GCCGCCCTGGTAACGC 135574 Query 3440 TTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCG 3499 | || ||| ||| | ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 135573 TGGATGCGGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCG 135514 Query 3500 CCTGACTTTTGCGGCTTGGCGATGAGCTGAATCAGGCGCGCCT-CAAGGCTGCTTTCGAC 3558 || | ||| |||| ||| || || ||||||| |||||| || | || Sbjct 135513 CCGGTCTTACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGC-GCCGCCAAC 135455 Query 3559 ACGGGAAATCGGT-GCGATGCCGTCCCAGCCGTCGCGCTGTTTCCAGCTCTGCACGGTC 3616 ||| | |||| || || |||||| |||||||| |||||||| || |||||| Sbjct 135454 ACGCTCCA-CGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 135397 Score = 208 bits (230), Expect = 1e-49 Identities = 422/618 (68%), Gaps = 14/618 (2%) Strand=Plus/Minus Query 15427 TTCAGCCAGCGCGAGCTGATGGTTATCTGGCCTGATTTCCTCGCGTGGGACACCGTCAAA 15486 |||||| | |||||||||||| | ||| || || ||| | || | |||||| | | Sbjct 123304 TTCAGCGACCGCGAGCTGATGTTGCTCTATCCCGACTTCGTGGCCTTCAACACCGCCGAT 123245 Query 15487 AATACCACCGCAACGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCGAC 15546 ||||||| | ||| | ||| || || ||||| ||||||||||| || ||||| Sbjct 123244 GCGACCACCGGCATGGCCTTCGCAACGGCACGTGCGCTCGGCCTGCGCGCCATGATCGAT 123185 Query 15547 CAGACTGTCGGCTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATC 15606 || |||||||| || | ||||| ||||| | ||| ||||| ||||||||| Sbjct 123184 GAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATC 123125 Query 15607 AGCGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGC-ACCGATGCTGACCTGCTCAACGA 15665 ||| || ||||| |||||| ||||||| ||||| || | | ||||||| | Sbjct 123124 AGCCGGGACGTCCATTGGGACCTGCAGG-ATCCGGCGACCGACGCCGGCATGCTCAATGC 123066 Query 15666 GGCCGGGGTTACAACGCTGGT--ACGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCACC 15723 |||| | || |||||| | || | | |||| | | |||||||| |||||| Sbjct 123065 CGCCGATATCACCACGCTGATCAACTCCA--ACGGGTACAAGTTCTGGGGATCGCGCACC 123008 Query 15724 TGCTCGGATGACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGCAGGTACTGGCC 15783 ||| ||||| ||||| ||| || |||| || ||| ||||| |||||| | |||||| Sbjct 123007 TGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCC 122948 Query 15784 GACACGATGGCCGAGGCGCACATGTGGGCGGTCGACAAGCCCATTACCGCCACGCTCATT 15843 ||||| || ||||||||||| || ||||||||||| | | || |||| | Sbjct 122947 GACACCATCGCCGAGGCGCAGTTGGTCTACGTCGACAAGCCGCTGCACCCCTCGCTGGTG 122888 Query 15844 CGTGACATTGTTGACGGCATTAACGCCAAATTCCGCGAGCTGAAATCAA--ACGGCTACA 15901 || ||||| | || ||||| |||||||| |||||||||||| | || ||| ||| Sbjct 122887 CGCGACATGCTCGAAGGCATCAACGCCAAGTTCCGCGAGCTG--GTGAACGCCGGATACC 122830 Query 15902 TCGTGGAGGGTAAATGCTGGTTCGATGAGGAATCGAAC--GACAAGGAAACCCTCAAGGC 15959 | | | || | ||||| ||| |||| | ||| | | | | | | || || Sbjct 122829 TGCTCGGGGCCACGGCCTGGTACGACGAGGGCGCCAACCTGCCCACGCAGCTGTCCAG-- 122772 Query 15960 CGGGAAACTGTATATCGACTACGACTATACACCGGTTCCGCCACTGGAAAGCCTGACCCT 16019 || ||| ||||||| |||||| || ||||| ||||| ||||||| |||| || Sbjct 122771 TGGTCGCCTGGCCATCGACTTCGACTACACCCCGGTGCCGCCGCTGGAAAACCTGCTGCT 122712 Query 16020 GCGCCAGCGTATCACCGA 16037 | |||||| |||||||| Sbjct 122711 GAACCAGCGCATCACCGA 122694 Score = 131 bits (144), Expect = 3e-26 Identities = 537/839 (64%), Gaps = 31/839 (4%) Strand=Plus/Minus Query 5018 AAGGGTGAGAAAATCGGCGTTGGTGTGACCGGTACTATCGCCAGCACGACTGACACCTCG 5077 ||||| ||||| |||||||| || || | ||| || ||||| | || |||||| Sbjct 134038 AAGGGCGAGAAGATCGGCGTGGGCGTCAACGGCACCATCGCTGGTCGCACCGACACCAGC 133979 Query 5078 GGCGACAAAGAGCGACAGACTGCAGATTTCACCGCGCTTGAGTCCAGTAAGTACGAGTGC 5137 ||| || || || ||| | || ||| |||| ||||| || || | ||||||||| Sbjct 133978 GGCAACGCCGAACGCCAGCCGGCCGATGTCACGGCGCTGGACAGCAATGGCTACGAGTGC 133919 Query 5138 AATCAGATTAACTTTGACTTCCACCTGAAATATAAAACCCTCGACCTGTGGGCGCGTTTT 5197 |||| |||| ||| | | ||| ||||||| ||||||||| Sbjct 133918 GTGCAGACGAACTACGACACCGCTATCCCGTATGCCCGCCTCGACGCCTGGGCGCGTCAG 133859 Query 5198 CAGGACTTCCAGCGCCGCATCCGTGACGCCATTGTCAAGCGTCAGGCGCTCGATCTCATT 5257 | | |||||||| || | |||||||| || || |||| |||||||| || | ||| Sbjct 133858 CCGAACTTCCAGACCCTGCTGCGTGACGCGATCATCCAGCGCCAGGCGCTGGACCGCATC 133799 Query 5258 ATGGCCGGTTTTAACGGTACCACCCGCGCTGACACCTCGGACCGCACCAAAAATACGCTG 5317 |||| ||| || ||||| |||| | ||| | ||| | |||||| | || ||||| Sbjct 133798 ATGGTCGGCTTCAACGGCACCAGCATCGCCAAGACCACCGACCGCGCAGCCAACCCGCTG 133739 Query 5318 CTGCAGGATGTGGCTGTAGGCTGGCTGCAAAAGTACCGCAATGAAGCCCCGGCGCGCGTG 5377 |||||||| ||| |||||| | || |||||||| | | |||||| ||||| Sbjct 133738 CTGCAGGACGTGAACAAGGGCTGGTTCCAGAAGTACCGGGAGCATGCCCCGAGCCGCGTC 133679 Query 5378 ATG---AGCAACATCACCGACGCGGACGGT-AAGGTCGTTTCGGCAGTGATTCGCGTCGG 5433 ||| || | |||| || | ||||| |||| | ||| ||| ||| Sbjct 133678 ATGTCCGGCGGCGACACC-CCGGGCACGGTGAAGG-----TGGGC-------GGCGCCGG 133632 Query 5434 TAAAAATGGTGACTATGAGAACATCGATGCACTGGTGATGGATGCCACCAACAACCTGAT 5493 | ||||| | ||| | || || ||||| ||||||| || |||||| Sbjct 133631 ------CGCGGACTACGCCAACCTGGACGCGCTGGTTATGGATGTGGTGTCCACCCTGAT 133578 Query 5494 TGA--CGAGGTTTATCAGGATGACCCGAACCTCGTCGCCATTGTTGGTCGTAAGCTGCTG 5551 || || || | ||| | || ||| | | || | ||| | || || || ||| || Sbjct 133577 CGAGCCGTGG--CACCAGCAGGATCCGGGCTTGGTGGTCATCCTGGGCCGCAACCTGGTG 133520 Query 5552 GCTGACAAATATTTTCCTCTGGTGAACAAACAGCAGGAGAACAGCGAGTCGCTCGCGGCA 5611 ||||| || || || | | ||||| | | || | | |||| ||| || || Sbjct 133519 CACGACAAGTACTTCCCCATCATCAACAAGGACCTGGCGCCGACCGAGCAGCTGGCCGCG 133460 Query 5612 GATATCATCATCAGCCAGAAGCGCATCGGCAACCTGCCTGCTGTGCGCGTGCCGTACTTC 5671 ||| | | | || ||||||||||| ||||| | ||| |||||| | | || Sbjct 133459 GATCTGGTGCTGGGCACTAAGCGCATCGGTGGCCTGCAGCCGGTGATCGTGCCTTTCGTC 133400 Query 5672 CCGGCGAATGCCGTACTGGTAACCACTCTGGAAAACCTCTCTATCTATTTTATGGATGAG 5731 ||||| || ||| | |||| ||| | ||||| || || || ||||| | | || Sbjct 133399 CCGGCCAACGCCCTGATGGTCACCTCGCTGGACAATCTGTCGATCTACTGGCAGATCGAC 133340 Query 5732 AGCCACCGCCGAAGCATTGATGAGAACCCGAAAAAAGACCGCGTGGAAAACTACGAGTCG 5791 ||| |||||| | | ||| | ||| | || ||||||||| |||| ||||||| Sbjct 133339 GGCCGCCGCCGTTACCTCATCGAGCAGCCGCAGAAGAACCGCGTGGCGAACTTCGAGTCG 133280 Query 5792 ATGAACATCGACTATGTGGTCGAGGTTTATGCCGCCG-GGTG-CCTGCTGGAAAACATC 5848 ||| |||||| |||||||| | || | |||| || | |||| | || |||||| Sbjct 133279 TCCAACGACGACTACGTGGTCGAAGACTA--CGGCCGTGGCGCCCTGGTCGAGAACATC 133223 >seq353 Length=102661 Score = 134 bits (148), Expect = 3e-27 Identities = 241/345 (70%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 433 AAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGTCCGGTTTCCCG 492 || || ||||| | || |||||||||| || | || | |||||||| || || Sbjct 45154 AATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCT 45213 Query 493 TTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAATTACGCATTGCA 552 ||| | ||| | ||||||||| ||||||||| ||||||| || || || ||| Sbjct 45214 GCCGGCGCGTACACAAACAGGTTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCG 45273 Query 553 TCGCGCAGCGATTCGACGTCAGTCGCGCTT-TGCGCCGGGTCAGTCACATACATGATGTA 611 |||||| || |||| ||| || ||| ||||||| ||| |||| |||| ||| | Sbjct 45274 GTGCGCAGTGAGTCGATGTCC-TCTTCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAA 45332 Query 612 ACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGATTCATTCAG 671 ||| || || |||||| | ||| |||||||| ||||||||||| ||| || || || Sbjct 45333 ACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAG 45392 Query 672 CCACGCAGAATTAAGC-GCGCTG--AGATATTCAGGCAGGCCGTAAATCTCCTGATTAAT 728 | || | || || |||||| || | || ||||||||||| || ||||| || || Sbjct 45393 CAGTGC-GCTTT--GCAGCGCTGCCAGCCACTCCGGCAGGCCGTAGATTTCCTGGTTGAT 45449 Query 729 ATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAACTCATG 773 ||| | ||| ||| |||| | | | | |||| || || ||||| Sbjct 45450 ATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGGGCAAATTCATG 45494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97901592549252