Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq4950 176 1e-39 seq962 141 2e-29 seq2798 122 2e-23 seq846 122 2e-23 seq1730 105 2e-18 seq447 102 2e-17 seq461 95.1 3e-15 seq841 91.5 4e-14 >seq4950 Length=777 Score = 176 bits (194), Expect = 1e-39 Identities = 202/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Minus Query 37243 ATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCATCATCGTCTGCCTGTCA 37302 |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 344 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 285 Query 37303 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 37359 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 225 Query 37360 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGGCAACATGAT 37401 |||| | | | | || |||| ||||||| ||| || | |||| Sbjct 224 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 165 Query 37402 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37460 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 164 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 106 Query 37461 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37491 ||| |||| || |||| | ||||||||| Sbjct 105 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 75 >seq962 Length=20954 Score = 141 bits (156), Expect = 2e-29 Identities = 337/499 (68%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 33053 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 33112 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 870 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 811 Query 33113 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGC 33172 ||||| || ||||| | ||| || | ||| ||| ||||| | | || | | | | Sbjct 810 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 751 Query 33173 CTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCAC 33230 | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| ||||| Sbjct 750 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCAC 693 Query 33231 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-GA 33288 | || | ||||| ||| || | | | || || || |||| | || Sbjct 692 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 635 Query 33289 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 33348 || | |||||| | | | || || || || | || || || || || ||| Sbjct 634 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 575 Query 33349 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 33408 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 574 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 515 Query 33409 GGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 33467 |||||||| | |||| | || | || ||| |||||| |||| | || ||| | Sbjct 514 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 456 Query 33468 ACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGC 33525 || | || | ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 455 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 398 Query 33526 AAGCCAGCGTCCCATCTGG 33544 | | | || | |||| || Sbjct 397 ACGGTAACGGCTCATCGGG 379 >seq2798 Length=1848 Score = 122 bits (134), Expect = 2e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 16788 ACCTTCTCATCAAGCCAATCCGCCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 16847 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1435 ACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 1494 Query 16848 TGAGCATGGTTGTAAAT 16864 ||||| ||||||||||| Sbjct 1495 TGAGCGTGGTTGTAAAT 1511 >seq846 Length=12855 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1555 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 1556 TTGGTTACGTCT 1567 Score = 96.9 bits (106), Expect = 9e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| || | | Sbjct 1686 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 1745 Query 18858 GCGAGGAT 18865 |||||||| Sbjct 1746 GCGAGGAT 1753 >seq1730 Length=17063 Score = 105 bits (116), Expect = 2e-18 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 33040 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 33099 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 12811 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 12870 Query 33100 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 33159 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 12871 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 12930 Query 33160 CTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCC 33219 |||||||||| | | ||| || || || |||||||||||| || ||| || || || Sbjct 12931 CTGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCA-CCTGCT 12989 Query 33220 G-GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCG 33278 | ||||| || || || | ||||| || || || || || ||| | |||| Sbjct 12990 GTGGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCG 13049 Query 33279 GCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGA 33338 || || | |||||||| | | | | | |||| || || || ||||| | Sbjct 13050 GCTTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCA 13109 Query 33339 GGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATT 33396 |||| |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || Sbjct 13110 GGTAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTT 13167 Query 33397 TGG 33399 || Sbjct 13168 CGG 13170 >seq447 Length=48793 Score = 102 bits (112), Expect = 2e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 38324 ACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCTGTGCA 38383 || ||||| || ||||| ||| || || |||||||||||||| ||||| || || || Sbjct 17422 ACCTTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCATGCGCC 17481 Query 38384 AGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCCGGCAAAATGCTGTAAAC 38443 || ||||| ||||| || || ||| | ||||| ||||||||||| || || || | | | Sbjct 17482 AGTCCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCCGAACAG 17541 Query 38444 AAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 38479 || |||||| ||| || ||| ||| |||||| Sbjct 17542 AAGATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 17577 >seq461 Length=6970 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 21675 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 21734 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 2303 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 2244 Query 21735 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 21794 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 2243 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 2184 Query 21795 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 21853 ||||| || || || |||||||| | || || || | ||| || || | || ||| Sbjct 2183 TCTGATGTGGCCACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 2125 Query 21854 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 21892 ||||||| || || || || | | ||| ||||| || Sbjct 2124 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 2086 >seq841 Length=45872 Score = 91.5 bits (100), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 21666 CCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTC 21725 ||||| | || |||| | ||| || ||||||||||||| || | ||| || || || Sbjct 39656 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 39715 Query 21726 CCGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCA 21785 ||| || |||||||| ||||| || ||||||||| ||| || || || || ||| Sbjct 39716 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 39775 Query 21786 CGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATA 21844 ||||| ||| ||||| || || |||||||| | || || || | ||| || || Sbjct 39776 CGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTA 39834 Query 21845 TCTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCC 21898 | || ||| ||||| | || ||||| || | | || ||||| || | ||| Sbjct 39835 ACGGACTTCCGGATCTTTTCCCAGGCGTCCTACGAGAATGACCTTGTTAATGCC 39888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124800693423870