Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq406 324 4e-84 seq98 127 6e-25 >seq406 Length=38937 Score = 324 bits (358), Expect = 4e-84 Identities = 467/656 (71%), Gaps = 2/656 (0%) Strand=Plus/Plus Query 18968 AGTTCGGACACGTCCACATTGGCGATGCGGACGACGTAACGCCAGTCGCGCAGGGTCAGG 19027 || ||| ||| || | ||||||||||| || ||||| |||||||| ||||| | ||| Sbjct 19822 AGATCGCTCACATCGATGTTGGCGATGCGCACAACGTAGCGCCAGTCACGCAGTGCCAGA 19881 Query 19028 CCGATGTCCCACTTGTAGTGGGTGCGGTAGCCCTGGTAGCGGCCGCCGGCGGCGTCGATC 19087 ||| | ||||| ||||| ||||| || ||||||||||| || || ||| |||| | Sbjct 19882 CCGTTATCCCATTTGTAATGGGTACGATAGCCCTGGTATTTACCACCACTGGCATCGACC 19941 Query 19088 AGCGTGTCCTCGCCGAGGTCACGCGATTGCAGGCCGGCCTGCGAACCCTTCGGGTAGATG 19147 || || | ||| || |||| | | || ||||| || | | || |||||| ||||| Sbjct 19942 AGGGTTTGCTCACCAAGGTTCTGAGTCTGTAGGCCAGCTTTCTGCCCTTTCGGGAAGATG 20001 Query 19148 GTATGCAGGGTGTTCGGCCCCCACACCGTCAGCCAGATGGATGCGTTGTCGCTGCCCGTG 19207 ||| | |||||| ||||| ||| ||||||||| || | ||| || |||| || Sbjct 20002 CCATGAACGGTGTTTTCACCCCATACCACCAGCCAGATAGAGGTGTTATCAGTGCCGGTA 20061 Query 19208 CCGCCGGCGTCGATGATGTTCTGGCCGTTCTCCGCGGACAGGCTGTTGAAGCGCGGCGTC 19267 ||||| |||||||| |||||||||||||| | || ||| |||| | | || | | | Sbjct 20062 CCGCCAGCGTCGATAATGTTCTGGCCGTTACCTGCAGACTTGCTGGAGTAACGGGATGAC 20121 Query 19268 AGGCCCATGAACTTCTCGGCGTCGATGCTGGAATCGCCGTAGAACAGCGTGGTCGCCTGG 19327 ||||||||||| | || | || | |||| |||||||||||||||||| ||| Sbjct 20122 AGGCCCATGAATTGCTGTGGGTTCACACTGGTATCGCCGTAGAACAGCGTCTGAGCCATC 20181 Query 19328 GTCTGGTTCATGCCTTCGATGAAGGCGCGGTCTTCGGACAGGCGCCAGGCGGCGGAATTG 19387 ||||||||| ||||||||||| || |||||||| ||||| || | | || | |||| Sbjct 20182 TGCTGGTTCATACCTTCGATGAATGCACGGTCTTCCGACAGACGGAATTCAGCAGTATTG 20241 Query 19388 CCGTTGAGGTCGGCCAGGGCCTTGTCCACTTCGGCGTAGGTTTCCAGCATCCCCATGCTG 19447 ||||| || || ||||| | ||| || || || || ||||||||||||||||| | | Sbjct 20242 CCGTTCAGATCAGCCAGAGACTTATCAACCTCAGCATAGGTTTCCAGCATCCCGCAGGAG 20301 Query 19448 TCCTTGACCTGCACGGTGCGGGACTTCTCGGGCTGCACGCCATAGTTCAGCTTGCGCCAG 19507 || | ||||| |||||| || || |||||||| || ||||||||| |||||| Sbjct 20302 TCTGTAACCTGTACGGTGGTTGATTTGCTTGGCTGCACACCGTAGTTCAGCAAGCGCCAT 20361 Query 19508 GTGCCGGTGGGCAGGCCGCTGCGAACCGTGGTCTTGTGCTCGGTGAAACCGTTGGCCTCG 19567 || | | |||| || || || ||||| |||| | || |||| |||| Sbjct 20362 GTCGCAGATGGCAAACCAGATCGCACAGTGGTGCGGTGCCCTGTTGGCAGGTTGCCCTCT 20421 Query 19568 ATGACGGTCATGT-CGTCGAGGATTTCGTTGGTTTCGTTCAGCATTTCGACGATCT 19622 | || |||||| |||| ||||||||||| || | | || | |||||| |||| Sbjct 20422 ACGAACATCATGTCCGTC-AGGATTTCGTTTGTCTGGGAAAGGAGTTCGACAATCT 20476 >seq98 Length=166217 Score = 127 bits (140), Expect = 6e-25 Identities = 416/630 (66%), Gaps = 21/630 (3%) Strand=Plus/Minus Query 29874 CTGCAGCGACCCCTGTTGTGCCGCTTCCTGCGAACGGGTCTAGCACCAccccccccGGCA 29933 ||||||||||| || || ||| || || || || || || | | ||| ||| | Sbjct 138838 CTGCAGCGACCAGCGTGGTACCGGACCCAGCAAAGGGATCGAGGATCCGCCCGCCCT-CT 138780 Query 29934 TGACAGG-CCGTACCAGTTCGCGCATCAGTGCCGTGGGCTTGCCAGTCAGGTGGTGCTTG 29992 | ||| ||| ||||| | |||||| || | || |||||||| |||| ||| |||||| Sbjct 138779 TCGCAGATCCGCACCAGCTGGCGCATAAGGTCGGTCGGCTTGCCGGTCATGTGATGCTTG 138720 Query 29993 TCGTCGCGGCGCACGACGGCCTG--GATGCAGCCGTCGAACGGGCCATCGTGCTCCAACT 30050 ||| | | ||| |||| | |||| |||| | | || | || || || Sbjct 138719 TCGGCTTTCCTCAC--CGGCTCGCGGATGACGCCGGGCAGCA--CCGGTGCGCGCCGCCT 138664 Query 30051 GCACGGCC--GCGCCCTTGGTGCCCCACACCACGTATTCGCACTGGTGCCGGAAATATCC 30108 | ||| | ||||||| | ||||||||||| || ||| ||||| ||||| || Sbjct 138663 CAAGGGCATGGTGCCCTTGCTTCCCCACACCACATACTCGGCCTGGTTGCGGAAGCGCCC 138604 Query 30109 TTTGTGCGGCGCCCGGGCGCCACGGCCCTTGTCCCAGGCGATGAGGCCGCGCCAGAACAC 30168 || || || | || || ||| | |||||||| | | ||||||||| | Sbjct 138603 CAGCTGGGG-GCGCACGC-CCTCGGTC-TTGTCCCACACAGCAACACCGCGCCAGGTGAA 138547 Query 30169 GCCGCCGGCCTGCACCGCGTCGGACATCAGCGGCAGTTGGCGCCAGTCGGTGAAGGCCAT 30228 |||| || ||||| |||||| | | |||||||| || |||||||||||||| || Sbjct 138546 GCCGGCGCACTGCAGCGCGTCAGTGGTGAGCGGCAGCTGTCGCCAGTCGGTGAACAGCAG 138487 Query 30229 GAAGTAGCCGCCGGGCTTGAGCACGCGCACGCACTCGGCGATCCACAAGGAACACCAAGT 30288 | | ||||| ||| |||||||| ||||||||| | |||||| ||| | Sbjct 138486 CACCGGGGCGCCGTCCTTCAGCACGCGGCTGCACTCGGCCAGCCACAACCGCATCCATGC 138427 Query 30289 CAGATAGCTGCGCTGGTCGCGCGAGTCGCCG--GAAAACGTCGGGTAGC-GCCCCTGCGA 30345 ||| | ||||||||||||| |||||| |||| | || | ||| || ||| Sbjct 138426 CAGGTGCGAGCGCTGGTCGCGCTCATCGCCGACGAAATCTGCGTGCAGCTGCTCCT---T 138370 Query 30346 GCCGCTTTGCGTGTACTTCGCGT-CGGGGTCTTTGGCCTTGTCGTCGCGCGAGAACCCGC 30404 |||| ||| |||||||| | | ||| | || ||| | || ||| | | || | Sbjct 138369 TCCGCCCTGCATGTACTTCACCTGCGGTGCCTGCTGCCGGGACGATGCGTGCG-TGCCTC 138311 Query 30405 CGCTGCTGTAGGGTGGGTCGGTGATAACGGCGTCCACGCTTTCGCTCGGCATGGCGATGA 30464 ||||| |||||| ||||| ||||| | |||||| | ||| || ||||| || | Sbjct 138310 CGCTGGCGTAGGGGGGGTCAGTGATGAGGGCGTCGAAGCTGCCGGCCGGCAGGGTTGGCA 138251 Query 30465 GCGCGGGCAGGGCCTCGCCCTGAATCAGTT 30494 | ||| |||||| ||||| || |||| || Sbjct 138250 GGACGGTCAGGGCATCGCCGTGGATCAATT 138221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135839339554170