Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq4950 881 0.0 seq846 601 9e-168 seq2747 86.0 2e-12 >seq4950 Length=777 Score = 881 bits (976), Expect = 0.0 Identities = 604/681 (89%), Gaps = 0/681 (0%) Strand=Plus/Minus Query 21503 CATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTCTGGAAGGTGTCAGATACAAAC 21562 |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| || Sbjct 777 CATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC 718 Query 21563 CATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATGGCCACACCGGAAAAGACATCA 21622 |||| || || | || ||||| | |||||| ||| | || || || ||||||||||||| Sbjct 717 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 658 Query 21623 TGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTATCA 21682 ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 657 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 598 Query 21683 CTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATATACCGGAAACAACGCGCGGCG 21742 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 597 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 538 Query 21743 CTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATTTCAGAACATCGACGCTTCTTC 21802 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 537 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 478 Query 21803 GCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACG 21862 ||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 477 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 418 Query 21863 CTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTGAGGTTGAGCGTGATGTCTGTT 21922 |||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||| Sbjct 417 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 358 Query 21923 TGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCAT 21982 |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||| Sbjct 357 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 298 Query 21983 CGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCA 22042 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct 297 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 238 Query 22043 GCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAAC 22102 |||||||| | | | | ||| ||||||||||||| ||||||| || ||||| | Sbjct 237 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 178 Query 22103 GCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAA 22162 ||||||||||||||| || | ||| || | | |||||| |||||| | ||| ||||||| Sbjct 177 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 118 Query 22163 AGCTGAGAATGATGCTCTTCG 22183 |||||| ||||||||||| || Sbjct 117 AGCTGAAAATGATGCTCTGCG 97 >seq846 Length=12855 Score = 601 bits (666), Expect = 9e-168 Identities = 738/999 (74%), Gaps = 9/999 (1%) Strand=Plus/Plus Query 13483 GCTGGCTAACCGTGCTTCCTATAGGTCTGCGGCATGCTTCCAATTACCTTTCCAAAGACA 13542 |||| || ||||| |||||||| ||||||||||| || ||||| ||||| || || | Sbjct 7085 GCTGATTATCCGTGTTTCCTATACGTCTGCGGCATACTGCCAATAACCTTCCCGAAAATG 7144 Query 13543 AAAACCCTATTCATTTCATCTCTTTCAATTGGGTCCCAAGCTGAATAACTCTTATTATCA 13602 || |||| ||||| || ||| | || || |||||||| | ||| || ||||| |||||| Sbjct 7145 AACACCCGGTTCATCTCGTCTTTCTCGATCGGGTCCCACGGTGAGTAGCTCTTGTTATCA 7204 Query 13603 GATATGACCAATAGTTTATCTTTCATCTTCTGGAGCCGCTTAACATGTGCAGTATCGTCA 13662 || || |||| ||| |||||||||||| | || || ||||| ||||| || || ||||| Sbjct 7205 GAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTACATGGGCTGTGTCGTCG 7264 Query 13663 TAGAGGAAGGCGTATATCCCATCCCCATCGAAGTTTTTGATGCTTACGTCTACAAACAAC 13722 || || || || || || ||||| || ||||| ||| | | | || || |||| | Sbjct 7265 TACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGTGATATCAACGAACAGC 7324 Query 13723 AGATCTCCTGGTTCAATAGTTCCTGACATGCTATCTCCGCGCACATTTATGATGCGGATA 13782 ||||| |||||||| || |||||||||||||| || |||||||| || |||||||||||| Sbjct 7325 AGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCACGTTAATGATGCGGATA 7384 Query 13783 TTTTCAGCCTTTCTACCATCGAACATGTGTCTGGCATCGTCCTGCGAATACTCAACCGAG 13842 ||||| ||||| || |||||||||||||| | |||||||| ||| |||||||||||| Sbjct 7385 TTTTCCGCCTTCCTGCCATCGAACATGTGACGAGCATCGTCAAACGAGTACTCAACCGAG 7444 Query 13843 CGGAGTATTTCCACGAATTCTCGATTGATAACGCCAGGACCCGCGCTAACTTCAAGATCT 13902 || || | |||||| || || || ||||| || || || || || || ||||| | ||| Sbjct 7445 CGTAGAACTTCCACAAACTCACGGTTGATGACACCCGGTCCGGCACTGACTTCTATATCA 7504 Query 13903 AGGATATCGATTTTAAATGTGTTTGAA--GATG-GAGATGCGTTTATCGGAGTAGTT--C 13957 || | || || || || |||||| | || || | | || | || | ||| | Sbjct 7505 AGAACGTCAATCTTGAAGTATTTTGAATGGCTGACAGCAG-GCTTCCCTGA-TTGTTGAC 7562 Query 13958 CATCTTTTTTCATAGGACCAATTCCGGTAGACAACCATTCCGAATTAACACCTAACGCGT 14017 | || ||| |||| || || || || | || | |||||| | |||||| || || | Sbjct 7563 CGTCATTTCTCATCGGGCCTATGCCTGATGAGAGCCATTCTGTTCGAACACCCAATGCAT 7622 Query 14018 TTGCTATTTCAACAATCTTTGTTGACCCACGAGCGTTTCCACTTGTCAAACGCCAGATCG 14077 | |||||||||||||| |||||||| || || ||||| || ||||||| | |||||| | Sbjct 7623 TAGCTATTTCAACAATTTTTGTTGAGCCGCGCGCGTTGCCGCTTGTCAGTCTCCAGATTG 7682 Query 14078 TTGGCTGAGCAACGCCTGACGCTTTAGCGAGAGCACCTTGAGACATACCAGCCAGTTCCA 14137 | || ||||| ||||| ||||| || || ||||| ||||||||||| |||| |||||| Sbjct 7683 TGGGTTGAGCTACGCCAGACGCCTTTGCAAGAGCGCCTTGAGACATTCCAGATTGTTCCA 7742 Query 14138 TTGCCTTGTTGAGACGGTCAGAGAGAGTTTCTTTTTTCATAATATTCAATTTATACGCTT 14197 | || ||| | || |||| ||||||||||||||||||| || ||||||||||||| Sbjct 7743 TCGCTAGGTTTAAGCGATCAGCAAGAGTTTCTTTTTTCATAAGTTTTAATTTATACGCTT 7802 Query 14198 GCGTATTAATGGTCAAAACACGTTTTGCTATTGCTTTGATTAATACTCATTGCTATTATT 14257 ||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 7803 GCGTATTGATGGTCAAAACACGTTTTGCTATTGCTTGGGTTAATACGCATTGCTATTATT 7862 Query 14258 TGTTGTGTGTTATACGAAAGGGAATAAGCAATGACTAACAAAGCAATACAAAAAGCTGTT 14317 || || |||| || ||||| |||||| || || | || ||| || | Sbjct 7863 CATTCATTGCAATACCAATAGGAATTGATAATGACAAATCAAACCATTCAACTCGCAATC 7922 Query 14318 GCCATTGCAGGAAGCCAGCAAAAACTCGCCTCTTTGTGTGGAGTTAAGCAGCCAACTGTA 14377 ||| |||| || || || ||| || | | || || || || || || || Sbjct 7923 AGTATTACAGGTAGTCAAAAACGACTGGCAGATCTATGCGGTGTAGCCCAACCCACAGTT 7982 Query 14378 TGGCGTTGGTTACATGGTGGCGGCATTGACGCTAAGTATGTGGCAGCAATCGTAAAAGCT 14437 ||||||||| |||| |||||||| ||||| || ||||| ||| || ||| Sbjct 7983 TGGCGTTGGCTACACGGTGGCGGAATTGATGCCCGCTATGTAATGAAAATTGTCTCAGCC 8042 Query 14438 ACAGGAGGAAGAATTAAAGCCAG-AGAACTTCGTCCTGA 14475 || || |||| |||||| |||| ||| ||||||| || Sbjct 8043 ACTGGTGGAAAGATTAAA-CCAGCAGATATTCGTCCCGA 8080 Score = 102 bits (112), Expect = 2e-17 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| Sbjct 1691 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 1750 Query 4701 GATTGTTATTCATTGCCGATATTCATCTTT 4730 || || | |||||||| | ||| || |||| Sbjct 1751 GA-TGCTGTTCATTGCTGCTATACA-CTTT 1778 >seq2747 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 24 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132313372007622