Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq757 223 8e-54 >seq757 Length=83746 Score = 223 bits (246), Expect = 8e-54 Identities = 386/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 1960 CGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGGACGTACGACTTGCTACCGATCA 2019 |||| ||||| || || || || |||| || ||||||| ||| |||||| || | || Sbjct 55047 CGTACTGGTCGGTATCACCAACACGCTGATACACGCGGATGTAGGACTTGGAGCCAACCA 54988 Query 2020 CCTG-CAGTGCTTCGCCGATGGCTCGCATTGCCTCCAGCCAGCGCGGATCGGTGATGTCC 2078 |||| ||| || |||||||||||| |||| || | ||||||| |||||| || ||| Sbjct 54987 CCTGGCAG-GCGTCGCCGATGGCTTGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCC 54929 Query 2079 AATCGGCGCAGCGCGAGCACGCGGCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAAC 2138 | ||||||| ||| || |||||| | ||| ||| | ||||| | ||| ||| || Sbjct 54928 ATACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAG 54869 Query 2139 GCCTGCGTGACGATCGCCTGGATTTCGGGGCGTGCGTCCGTCGTCCAATCGCGAAGGCAC 2198 || | | || | || | |||||||||||| | || ||||| || || ||||| Sbjct 54868 GCATCATTTACCAGCGTGACCACTTCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCAT 54809 Query 2199 TCGTCGATCATCGACTTCGCGGCCTGCAAGCGTTCATCGAACGCGATGCGGTCTTGGATG 2258 ||||| |||| | | ||| ||||| | |||||| ||||| ||||||| || || | | Sbjct 54808 TCGTCAATCAATGCCCGCGCAGCCTGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACG 54749 Query 2259 GCACGCTGGATGCGGTAGCGGCCGTCGAACGAGTACAGGGTGACGTTGCCCTTCTTGCCG 2318 |||||| ||| | | || || ||||| | |||| |||| || |||||||| ||| Sbjct 54748 GCACGCATGATCTTGAAACGCCCATCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCG 54689 Query 2319 CCAACCTTCGAGCCATACTCCTCGGCCGAAAGGTCGATGAAGGCCGAGATATCACCGAAA 2378 || | || | ||| |||| |||||| || |||| ||||| |||||||||||| Sbjct 54688 CCGATCTGGGCGCCGTACTGCTCGGCGCTGAGTTCGACAAAGGCTTCAATATCACCGAAA 54629 Query 2379 ATTCGGGCTTTCAGCTCGACCAGCCCCTTCGATCTC-GTTTTGGCTTCGTCCGCCAGCTC 2437 ||| || | | |||| | | ||| | | | ||||| ||| |||| | Sbjct 54628 GCCGAGGCCTTGAATTTCGCCAG-CACGTCGCTGGCGGCGCGGGCTTTTTCCACCAGGCC 54570 Query 2438 GCGAACGAGGCGATCGCGCTCACGGTCGATCGGCTTGATCATGGTTTCCGGAATCAGGCA 2497 | || | | ||| ||||| ||||||| |||||||||||| ||||||| ||||| | Sbjct 54569 AAGCACCAAGGCATCCCGCTCCAGGTCGATAGGCTTGATCATGCTTTCCGGGATCAGTC- 54511 Query 2498 GCCTTT-CGCGTC 2509 || ||| |||||| Sbjct 54510 GCTTTTGCGCGTC 54498 Score = 158 bits (174), Expect = 3e-34 Identities = 665/1036 (64%), Gaps = 33/1036 (3%) Strand=Plus/Plus Query 14695 CGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCAC 14754 || |||||||||||||||||| || ||| || | |||||||| || |||||||| Sbjct 62400 CGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAAGCCGCGTTCCAT 62459 Query 14755 GAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTT 14814 | | | | | ||||||||| || || || ||||| ||| |||| ||||||||| | || Sbjct 62460 GCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGGGGCGGTGAAGTC 62519 Query 14815 CACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTC 14874 || | || || ||||||||| || ||||| || || || ||||||| || || Sbjct 62520 CATGTGATCAGCACCCACGACGGCACGGAGAACGCCTTTAACGACCTGGTCAACGAAATC 62579 Query 14875 CGTTCCGGCAAGAAGCCCTACAGC---CTGCATCGCATCACGTTCGCCGACGCAGTCCAG 14931 || | ||| |||| | | || || ||| ||| |||| || || || Sbjct 62580 CGGGCTGGC---AAGCGCAATGGCGAAGTGTTCCGCTGCACTTTCGGTGAAGCCGTTGCC 62636 Query 14932 GACGGGCTCTACCAGCGCATTTGCCTGCGCAAGGGCGAAGCCTGGACGGCC--GAAGGTG 14989 || || || ||| |||| | |||||||| || | | | | || | | || | || Sbjct 62637 GATGGTCTGTACAAGCGTGTCTGCCTGCGTAAAG--GTATTGAGTACAGACTTGAGGATG 62694 Query 14990 AAGCCAAGTGGGTCAAGGATATTCGCGCGTCGTACGGCGCGGATGCTGAGGAAGAGCTGG 15049 || | ||||| || | || || | ||||||| | || || |||||||||| Sbjct 62695 AAATCGCCTGGGTGAATGGCGTTTACGGTTTCTACGGCGATGCAGCCGACGAAGAGCTGG 62754 Query 15050 ACTGCGTGCCGAAGAACAGCGGCGGCGCATGGCTGTCGCGCGCGCTGATCGAGTCGCGCA 15109 |||||||||| | | ||||||| |||| || || ||| ||||| |||| Sbjct 62755 ACTGCGTGCCCACCCAGGGCGGCGGTGCATTCCTCAGCATGGCCCTGGTCGAGCAACGCA 62814 Query 15110 -TGTCGGCTGACACGCCGGTGCTGCGCTGGGCCTGCAAACAGGGTTTCGAGGTGCTTCCC 15168 | | || | | |||||||||||| || | | || |||| ||| | || Sbjct 62815 GTAACCGC-GCCGTGCCGGTGCTGCGACTTGCGTACCCGCAAGGTTACGAAACCATCGCC 62873 Query 15169 GACCACATCCGCGCAGCCGAATGCCGCGATTGGCTCGAAGCGACGCTCGGCCCGCTGCTC 15228 || || | ||| || || | | || ||| ||||| | | |||||||||| Sbjct 62874 GAGCATCTGCGCCTGGCTGAGTCTCTGGAGTGGTGCGAAGAGCATTTGCTCCCGCTGCTC 62933 Query 15229 ACGGCGCTCCCGGTCGACGCCCGCTCGTACAACGGCGAGGACTTCGGACGGACTGGCGAC 15288 ||||| ||||| | |||| | | | | ||| ||||||||| || | |||||| Sbjct 62934 TCGGCGATCCCGCTGGACGTACAGAGCTTCTATGGCATGGACTTCGGCCGCTCCGGCGAC 62993 Query 15289 CTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGGTTCGC---CGCGTGCCGTTC 15345 || |||| | |||| || || || ||||||| ||| ||| ||| ||| || Sbjct 62994 CTCTCGGTTTTCTGGCCGTTGCTCAAAGAACAGAATCTG---CGCAAGCGCACGCCCTTT 63050 Query 15346 ATCGTCGAGCTGCGCAACGTGCCGTTCCGGCAGCAGGAGCAGATCGCCTTCTACCTGCTT 15405 | ||||||||||| ||||| |||||| ||| || ||||| |||||| | || Sbjct 63051 GTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACAACTTCAGATTAAGTTCTACATTATT 63110 Query 15406 GATCGGCTCCCGCGCTTCACGGGCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACCTC 15465 ||| | || |||| |||||| ||||| |||| |||||| | || Sbjct 63111 CGTCGCTTACCCAACTTCCTCAAAGGCGCCGATGACGCCAGGGGTAACGGCTCGCAACTG 63170 Query 15466 GCAGAAGTCGCGATGCAG-CG-CTACGGC-GCATCGCGCATCCAGCAAGTGATGCTGTCC 15522 |||||| | ||| | || | |||| || | ||||| ||| |||||||| || Sbjct 63171 TCAGAAGATAC--TGCCGTCGAGTTCGGCTTCAAC-CGCATTGAGCGGGTGATGCTCACC 63227 Query 15523 GAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCGGCGTTCGAAGACGGCACGATC 15582 ||| ||||| || || ||||||| || | ||||| || | ||||||| ||| || Sbjct 63228 GAGGGCTGGTACCGGGACAACATGCCACCGTTCAAGGCAGCCCTGGAAGACGACACCTTC 63287 Query 15583 GACGGCCTCCCGAAGGATGCCGACGTGCTCGCGGACCTGCGCGCCGTACAGGTCATCAAG 15642 ||| | |||| || ||||| || ||| | || || | | | ||||| Sbjct 63288 TACGACATCCCTGCCGACAAAGACGTAGTCAGTGACGTTCGGGCTTTCCGCATGGTCAAG 63347 Query 15643 GGCGTGCCGCGCATCCCGGACGTCCGCGCGACCGGCCAGGACGA------CGG---CAAG 15693 ||||| | ||||||||||| || | | | ||| ||| ||| |||| Sbjct 63348 GGCGTAGCCCGCATCCCGGAAAAACGGACCAATGAAAAGGGCGAAAAAGCCGGACCCAAG 63407 Query 15694 CGCCACGGCGACGCCG 15709 |||||||||||||||| Sbjct 63408 CGCCACGGCGACGCCG 63423 Score = 107 bits (118), Expect = 5e-19 Identities = 288/436 (66%), Gaps = 27/436 (6%) Strand=Plus/Plus Query 13338 TGCAGTACGTGCGCCGCGAAGACTACGTGCGCAACCAGACCGTCATCGAAGCCAAGCTCG 13397 |||| ||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| | Sbjct 61079 TGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTG 61138 Query 13398 ACGCGATCGCGCTCAGATTCGAAAACTTACAACTCCGGGGAAATCAATGACGCCCACCAA 13457 | ||| | || |||| | |||| | | ||| | ||| | ||| | || Sbjct 61139 ATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATT-----AAAAGGACTGA-----AGTAA 61188 Query 13458 TCCGCTGGGAATCGACCACGCCAAGGTGCGCCGCGAATCGCTGCGCTGGTATCTGATTCT 13517 || |||||| |||||| |||||| ||||| ||||||||||| | || Sbjct 61189 -----TGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAA 61243 Query 13518 GGCGCTGTACAACGCGCGGCCCGAGGAAGTCGTCGAGGACGTGATCCAGATG---ACGAT 13574 | | ||| ||| | |||| |||| || || || | || | ||| | || || || Sbjct 61244 GACCCTGGACACCTCGCGCCCCGTAGA--TCCTC-ATGAGGCTATCGTGTTGTCCACCAT 61300 Query 13575 GCGCTCGATCTTCGCCGACATCACGGCGCTTGAGGTGCGCAAGGAACTGGACTACCTCGC 13634 | |||| ||||| ||| | | ||| ||||| ||||| |||||||| || Sbjct 61301 CCAGGGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTCGACTACCTGGC 61360 Query 13635 CGATCGCGTGCTGGTGAAGCTGCGCAAGGAACCGTCCGGCCGCTGG---TGGGGCGATCT 13691 ||| || ||||||| ||| ||| | || ||| ||| || ||| || Sbjct 61361 CGACCGTAGCCTGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGC---CT 61417 Query 13692 CACGCGCTACGGCGTCGACATCGCCGAGTACACGATCGATTGCGAGCCGGGCATCGCGCG 13751 || | |||||| |||||||| || || ||||| |||| ||| | || ||| | || || Sbjct 61418 GACCCACTACGGGGTCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCG 61477 Query 13752 GCCGGCCAAGTACTGG 13767 || | ||||||||| Sbjct 61478 ACCAGAAAAGTACTGG 61493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117457594041540