Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq406 217 4e-52 >seq406 Length=38937 Score = 217 bits (240), Expect = 4e-52 Identities = 472/704 (67%), Gaps = 8/704 (1%) Strand=Plus/Minus Query 6162 GACGATGGCGGATGTCGCCAAGCGCCTCGACCCGAACGGGAAGGTCGACATCATCGTCGA 6221 |||| |||| || || |||||| ||| || ||||||||||| |||| || ||||| Sbjct 20526 GACGCTGGCTGACTGGGCTAAGCGCACCGATCCAAACGGGAAGGTAGACAAGATTGTCGA 20467 Query 6222 AATGCTGAACCAGACGAACCCGGTCTTGCAGGATATGACCGCGATCGAGGGCAATCTACC 6281 | | || |||||| ||| || || ||| |||| | |||||||| || || Sbjct 20466 ACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTAGAGGGCAACCTGCC 20407 Query 6282 GACAGGCCACCGCACGTCGGTTCGCACCGGTCTGCCCACACCGACGTGGCGCAAGCTGTA 6341 ||||| |||||||| | || || | ||| |||| | |||| |||||| |||| | Sbjct 20406 AACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGCGCTTGCTGAA 20347 Query 6342 CGGCGGCGTTCTGCCGAACAAGAGCTCGACTGCACAGGTAACGGACAACTGCGGCATGCT 6401 | ||| || | ||| | ||| | || | |||||| || ||| |||||| ||||| Sbjct 20346 CTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCTGCGGGATGCT 20287 Query 6402 CGAAGCGTACGCGGAAGTCGACAAGGCGCTGGCCGATCTGAACGGCAACACCGCGGCATT 6461 ||| | || || || || || ||| | ||||| |||||||||||||| || || | ||| Sbjct 20286 GGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGATCTGAACGGCAATACTGCTGAATT 20227 Query 6462 CCGTCTGTCCGAAGACCGGGCGCAGATCGAGGGTATGAACCAGGAAGTTGCGCAGACGCT 6521 ||||||||| |||||||| || ||||| |||||||||||| | | || |||||||| Sbjct 20226 CCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAGCAGATGGCTCAGACGCT 20167 Query 6522 GTTCTACGGCAATGACGGCATCGCCCCCGCCG-AATTCACGGGGCTGTCGCCGCGCTACA 6580 |||||||||| || | | | | ||| | | |||||| ||| ||||| | || ||| Sbjct 20166 GTTCTACGGCGATACCAGTGT-GAACCCACAGCAATTCATGGGCCTGTCATCCCGTTACT 20108 Query 6581 ACTCGTTGAGCGCCGAGAACAAGGACAACGTCATCGACGCTGGCGGCACCGGATCCGACA 6640 | | || | ||| | ||| | |||||||||||||| ||||| | || | Sbjct 20107 CCAGCAAGTCTGCAGGTAACGGCCAGAACATTATCGACGCTGGCGGTACCGGCACTGATA 20048 Query 6641 ACGCCTCGGCATGGCTCGTTGTGTGGGGCCCGAATACCTGCCACTCGATCTACCCCAAGG 6700 || |||| ||||| || || ||||| || ||| || |||| ||| || | Sbjct 20047 ACACCTCTATCTGGCTGGTGGTATGGGGTGAAAACACCGTTCATGGCATCTTCCCGAAAG 19988 Query 6701 GTTCGAAAGCAGGTCTTTCGGTCGAGGACAAGGGCCAGGTCACCATCGAAAATGCGGACG 6760 | |||||| || || | || || || || ||| | | |||| Sbjct 19987 GGCAGAAAGCTGGCCTACAGACTCAGAACCTTGGTGAGCAAACCCTGGTCGATGC----- 19933 Query 6761 GCAACGGCGGTCGGATGGAAGGTTACCGCACGCACTACAAGTGGGACATCGGCCTCACGC 6820 || || ||| | || || || || || ||||| ||||| | ||| || | | Sbjct 19932 -CAGTGGTGGTAAATACCAGGGCTATCGTACCCATTACAAATGGGATAACGGTCTGGCAC 19874 Query 6821 TGCGCGACTGGCGCTACGTGGCGCGGGTCTGCAACATCGACGTG 6864 |||| |||||||||||||| | ||| || ||||||||| ||| Sbjct 19873 TGCGTGACTGGCGCTACGTTGTGCGCATCGCCAACATCGATGTG 19830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135589770163398