Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq4950 230 7e-56 seq4719 116 1e-21 seq2747 86.0 2e-12 >seq4950 Length=777 Score = 230 bits (254), Expect = 7e-56 Identities = 187/224 (83%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 45141 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCG 45200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 251 Query 45201 CCTACAAAGAGCAGCGCGATACCGTTACTCATA-AGCTGACGCTGGCGAACGCGACAATT 45259 ||||||||| |||||||| | | | || | | |||| ||||||||||||| ||||| Sbjct 250 CCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACTGAAGCTGGCGAACGCGGCAATT 192 Query 45260 ACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATATATAAAGGAA 45319 || |||||| || ||| |||||||||||||| | || |||| || ||| | ||||| Sbjct 191 ACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAG 132 Query 45320 TTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGT 45363 ||||| ||||||||||||| ||||||||| |||| |||| ||| Sbjct 131 TTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGTGATGGTGT 88 >seq4719 Length=950 Score = 116 bits (128), Expect = 1e-21 Identities = 140/185 (76%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 46640 GCGTTGTATCGTCGCAGTATCACCGCATTAACAATGACCGCAGCCCTTAATGGGAGCTCC 46699 ||| ||||||||||| |||| |||||||||| ||||||| ||||| | |||| ||| Sbjct 319 GCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCG-ACGGGGAATTCC 261 Query 46700 TTCTGCGTGAGTGTGCAATGATAATCAATAACGATGCATACCGGGGTTTGCAGCTTTTAC 46759 |||||||||||||||| |||||||| ||||||||| |||||| ||| | | | || Sbjct 260 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTTACTGTGCTGAC 201 Query 46760 GATGGCTGGTTTATCCCTCATTGCTCGCCATCTCGATGCGGGGGTAGAAGAAATCGAGGG 46819 || || ||| ||||||| | |||| | || |||| ||| ||||||| || || Sbjct 200 AGACGCAGGGTTA-CCCTCATAG-TCGCTTTTCCGGTGCGATGGTGGAAGAAACCG-GGA 144 Query 46820 TGTTT 46824 ||||| Sbjct 143 TGTTT 139 Score = 102 bits (112), Expect = 2e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 45460 CCCCAGACTGGCAGACTCCGCTCAACGGGATTATTTCACCCTCAAAGAGCGAGTGACAAC 45519 |||| ||||||||||| ||||| ||||||||||||||||||||| |||| | ||| || Sbjct 944 CCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCAC 885 Query 45520 AATGCAAAAGCAACTGGAAGGGGCGCAGGACTATATCAGAACGCAGTGC 45568 |||||||| ||||||||||| | ||| | ||||| | ||||||| Sbjct 884 TATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGC 836 >seq2747 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 26342 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 26393 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 24 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149940010132788