Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19 268 1e-66 seq1288 138 1e-27 >seq19 Length=879724 Score = 268 bits (296), Expect = 1e-66 Identities = 1027/1591 (65%), Gaps = 40/1591 (3%) Strand=Plus/Minus Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 ||| || ||||||| ||||| || || | ||||||| | || ||| | || ||| Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 585860 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 ||||| || | || ||||| || || || ||||| || ||||| | ||| | ||| Sbjct 585859 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 585800 Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 585799 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 585740 Query 62808 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 62867 ||||| || || | | | | ||||| | | ||| || |||||| Sbjct 585739 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACTCT 585680 Query 62868 CCATCTATTACAAA-CATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 62925 || | || ||||| | || ||| |||| || ||||| ||||| || || ||||| | Sbjct 585679 CCGTTGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGCAACCTCGTC 585621 Query 62926 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 62984 | | | | ||| | ||| || || || ||||| || || ||||| ||||||||| Sbjct 585620 TTTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAA 585563 Query 62985 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63044 ||||| || || || |||| ||||| ||||| | | | || || || ||| Sbjct 585562 TTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTT 585503 Query 63045 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---- 63100 |||||||| || || | ||| || ||| | || | || |||| || | ||| Sbjct 585502 TCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGG 585446 Query 63101 GTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63160 | | ||||| || ||||||| | ||| || ||||| || | || || || | Sbjct 585445 GCACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAAT 585388 Query 63161 GT-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 63219 | ||| ||| || ||||| ||||| | || ||| ||||||| || | || | Sbjct 585387 CTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCC 585328 Query 63220 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCC 63278 | |||| || || ||| | |||||| || ||| |||| |||||||| | | |||| Sbjct 585327 TTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCT 585269 Query 63279 TCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || || || |||||| || || || || || | ||| | |||||| || Sbjct 585268 TCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGC 585212 Query 63336 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63395 |||| ||| ||||| | | | || ||||| ||| ||||| || | || | ||| Sbjct 585211 TCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCG 585152 Query 63396 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63455 || | ||| | ||| ||||||| || | ||| || || | || || || || Sbjct 585151 GTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCA 585092 Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 ||||| ||| ||||||| || ||| || || ||| || || ||||| ||| Sbjct 585091 ATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGT 585032 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 || ||| ||| | ||||||| || || || || || || || || || || |||| Sbjct 585031 GAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATG 584972 Query 63576 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 63635 | |||| ||| ||| ||||||||| | | || | ||||||||||| || || Sbjct 584971 GTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGG 584912 Query 63636 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63695 | || ||||||||||| ||| | || || ||||| |||| || || ||| Sbjct 584911 GTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATA 584852 Query 63696 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63755 || || ||||| ||||| || |||||||| |||| || || || | ||| || || Sbjct 584851 TCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT- 584793 Query 63756 TTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 |||| || |||||||| || ||||||||||| | |||||||| |||||||| | | | Sbjct 584792 TTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAA 584733 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT---CCTTATATTTGTTAAC 63871 | ||| || | || |||||||| || || | | | || | |||| | || Sbjct 584732 TCCAAAATCCCTGTCATAAATAATGGTGCTGTCCAGAATCTCTGCATTTTCTTTGATCAC 584673 Query 63872 --TATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63929 | ||| || || ||| | | || | ||| | |||| | || ||| Sbjct 584672 CTCCCAAACATCGT-----CTGCAATCAGTGAAGCAGATTTGTCTGTTTTGGAATCCACA 584618 Query 63930 TAGTTGAATAAATC--CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 63987 ||||| ||| | | |||||| || || ||| | || | |||||| |||| Sbjct 584617 TAGTT--ATACAGCATCTCCATGGTTTTGGAGAAAGATTTCGTGGTGTTCTTGTGCAGAT 584560 Query 63988 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGG 64047 | ||||| || || | || || | | |||||||| ||||| | || || | | Sbjct 584559 TAGATACCGCAATACGGGAAGCCAATAATGCATAATCAGGATGCTTGGTGGTCAGCGAAG 584500 Query 64048 CTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTT 64107 |||| |||| || ||||| | |||| |||| || ||||| |||| || | |||| Sbjct 584499 CTGCCGTTTCCGCAGCCAGGTTATCCAGTTCTGAGGTGGTTACCCCATCGTACAAACCTT 584440 Query 64108 GAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATA 64167 ||| ||||| | || | | ||| ||||| | | || | || |||||||| || | Sbjct 584439 CAATTACCTTTTTCGCCACATCAATCGGATCCACCAGTTCTGCATTAAAGCCATAGCAGA 584380 Query 64168 ATTTTCTAATACGAGACGTGATTTTATCAAA 64198 ||| |||||| | || |||||||| || Sbjct 584379 GCTTTTCAATACGGGCGGTTATTTTATCGAA 584349 Score = 237 bits (262), Expect = 2e-57 Identities = 583/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 33011 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33070 ||||||| || |||||||||||||| || || ||||| ||||| |||| || || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 33130 | ||||| ||||||||||||||||| ||| ||| ||||| || | |||| ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 | |||| || || || || || ||||| | ||||| || |||||| || || | Sbjct 584015 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 583956 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | ||| || | || | |||| |||||| | ||| || |||||| || |||| Sbjct 583955 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 583896 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | |||| ||| | ||| || || | |||| | | || || || | Sbjct 583895 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 583836 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || || |||| ||||| ||||| ||| | || || ||| || || || |||| Sbjct 583835 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 583776 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA-AAGAAGATTCCT 33429 | ||||| | ||||| | ||| || || ||| ||| | ||| | ||||| || ||| Sbjct 583775 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAA-GCTCCCGCTGAAGAAAATGCCT 583717 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33489 || ||||| || || || | | | || || || ||| ||| ||||| Sbjct 583716 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 583660 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 ||||| || || || || ||||||||||| | ||| |||| ||||| || || | Sbjct 583659 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 583600 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | |||||| | | |||||||| ||| |||||||||| || ||| |||| || || Sbjct 583599 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 583540 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 |||||||| || ||||| || || || ||||| | || |||| || ||||||||| Sbjct 583539 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC- 583481 Query 33670 GTACAAAATCGTT--CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | || | ||| | || | |||||||| || || |||||||| || |||||||| | Sbjct 583480 GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 583422 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33787 | | || ||| || |||| ||| ||| ||| || | ||| | || | Sbjct 583421 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 583362 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 583361 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 583302 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||||| ||| |||| || || |||| |||||| Sbjct 583301 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 >seq1288 Length=22276 Score = 138 bits (152), Expect = 1e-27 Identities = 254/370 (69%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| || || |||||||| || |||||||| | || || || ||||| || || || Sbjct 677 CAGACAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGT 618 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| ||| |||| ||||| ||||| || ||||| || || || ||| || || || || Sbjct 617 GAGGCCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAA 558 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCAT 33478 |||||| || || || || ||||| || | || | ||| || || | |||| || | Sbjct 557 GAAGATGCCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCA-AAGCTGCGCGAGTTTT 499 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| ||||| ||||||||||| || || ||||| || ||||| | Sbjct 498 CGATCCAGCGGATCGCCCACTCGGCCTTCTTGCGCACGGCGGGGATCGTCTCGATGGCGT 439 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 | ||||| | | || | || || | || || ||||||| ||||| ||| Sbjct 438 TGAAGAGCTGGGCCTTGCGCGCGGTGTCCTTGATGTAGGTGTCGATCAGCAGACTGTACG 379 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || || || |||||||| ||||| || || || |||||||| || | ||||||| | Sbjct 378 TCTCGGAGTGGATGTTTTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGA 319 Query 33659 TCTGTACTTC 33668 | || || || Sbjct 318 TTTGCACCTC 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622866785303320