Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq120 89.7 6e-13 seq167 86.0 7e-12 seq16 86.0 7e-12 seq6999 84.2 2e-11 >seq120 Length=487886 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCA--ACTAA 7058 || ||| ||| ||||||| ||| || || ||||| || || | | ||| || | Sbjct 302602 ACCGCTGCGTTAGCCTGTGCACCTGAGTGCGGTTGTACATTGACCCAG--GCAGCACCGA 302545 Query 7059 ACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGC 7118 | |||| ||| ||||||||||| || | || || || ||||| | |||| || | Sbjct 302544 ATAGTTTTTTTGCACGCTCAATCGCTAAATTTTCAATTTCATCTACAACCTCACATCCAC 302485 Query 7119 CGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCG 7178 | ||||| ||||||||||| || || ||||| || ||||| |||| ||||| | Sbjct 302484 CATAATAGCGTTTGCCTGGCAGGCCTTCCGCATATTTATTGGTTAAAACTGAACCAGCAG 302425 Query 7179 CTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220 ||| |||||| | | | || ||||||| |||||||||| Sbjct 302424 CTTCCATAACCTGTTTGCTGACGAAGTTTTCAGATGCAATCA 302383 >seq167 Length=63523 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 6964 CAATACTGAATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACC 7023 |||||||| |||||||| ||| | ||| | | ||||||||||| ||||| | || Sbjct 50636 CAATACTGTGTCGCCTGGTTGCAGAAGTGCAAAGAACACAGCTTGGTTGGCCTGGGTGCC 50577 Query 7024 GGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGC 7083 ||| || ||||| ||||| |||| ||| | || |||||||| || || |||| || Sbjct 50576 GGAGTGTGGTTGCACGTTCACGAAGCCGCAGCCGAAAAGTTCTTTTGCGCGGTCAA-TGG 50518 Query 7084 CAGGTT-CTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATC 7142 ||| || ||||| | ||||| || ||||||| | || |||||||| || | Sbjct 50517 CAGCTTGCTCGACAACGTCGGCGAAATCAGCGCCGCCGTGGAAACGCTTGCCTGGGTAGC 50458 Query 7143 CCTCAGCATACTTGTTGGT 7161 | ||| | ||||||||| Sbjct 50457 CTTCAACGGTCTTGTTGGT 50439 >seq16 Length=55361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| || |||| || || ||| || || || |||| || || || ||||| || Sbjct 8941 CAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAGCCGGCGTGTGGCTGGACGTTGGC 9000 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC---GATCTCATC 7101 | ||| | | |||||||| || || || || || ||||| | ||| ||| || | Sbjct 9001 GTAATCGGCGCCGAACAGTTCCTTGGCGCGGTCGATGGCCAGTTGCTCAACGATGTCGAC 9060 Query 7102 GGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 | | | ||||||||||| || || ||||| ||||| || || || ||||||||||| Sbjct 9061 GAACT---CGCAACCGCCGTAGTAGCGCTTGCCCGGATAGCCTTCGGCGTACTTGTTGGT 9117 Query 7162 AAAAATAGAACCTTGCGCTTTCATAAC 7188 | || |||||||| || | ||| || Sbjct 9118 CAGAACCGAACCTTGAGCCTCCATCAC 9144 >seq6999 Length=473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 67195 ATTTGGTGCCGATTGTCCGACTCGAACGGACCACCTGATGCTTACAAAACAACTGCTCTA 67254 |||||||||||| | | | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 243 ATTTGGTGCCGACCGCCGGTTTCGAACTGGCCACCTGATGATTACAAATCAACTGCTCTA 302 Query 67255 CCGGATGAGCTAAATCGGC 67273 || ||||||||| ||||| Sbjct 303 CCAAATGAGCTAAGTCGGC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553282168967160