Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq374 95.1 1e-14 seq1971 87.8 2e-12 seq426 87.8 2e-12 seq396 87.8 2e-12 >seq374 Length=102525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || | |||||||| | || || | || || |||| | Sbjct 649 ATGCAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCG 708 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| ||||| || ||||| || ||||||||| Sbjct 709 GACACCATTGAGAACGTCAAGACTAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAA 768 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| ||||| || | | | | | |||||| ||| Sbjct 769 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAAC 828 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 829 ATTCAGAAGGAGTCCAC 845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 |||||| | |||||||| | | |||||| || ||| | || || ||||| ||| Sbjct 1 ATTACCCTGGAAGTCGAAGGCTCCGACACTATTGAGAACGTAAAGACTAAGATCCAGGAC 60 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || ||||| || ||||| || ||| | || |||| || |||||||||||||| ||| Sbjct 61 AAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAACTCGAGGAT 120 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | ||| ||||||||||| || || || || Sbjct 121 GGCCGCACTCTTTCCGACTATAACATTCAGAAGGAGTCCAC 161 >seq1971 Length=9940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || || |||| || |||| | | Sbjct 4827 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCC 4886 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || ||||| ||| Sbjct 4887 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 4946 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || ||||||||| ||||| || | | | | | ||| || ||| Sbjct 4947 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 5006 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 5007 ATCCAGAAGGAGTCCACTCTTCA 5029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| ||||||| | Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| |||||||| || ||||| ||| Sbjct 4203 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAA 4262 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || || ||||| || || || | | | | | || ||||| ||| Sbjct 4263 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAAC 4322 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | || || ||| Sbjct 4323 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 4352 >seq426 Length=101737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || ||||||| || | || ||| | || || |||| Sbjct 287 AATGCAAATCTTTGTAAAGACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGGGTTC 228 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 227 TGATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 168 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || |||| || |||||||||||||| |||| | | | | | ||||| || Sbjct 167 GCAGCGTCTAATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCTGATTACAA 108 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 107 TATTCAGAAGGAGTCCAC 90 >seq396 Length=82706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || ||||||| || | || ||| | || || |||| Sbjct 287 AATGCAAATCTTTGTAAAGACCCTAACTGGCAAGACCATCACCCTAGAGGTTGAGGGTTC 228 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || ||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 227 CGATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 168 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||||| || ||||||||||| || |||| Sbjct 167 GCAGCGTCTGATTTTCGCTGGCAAGCAACTTGAGGATG 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429881888120685