Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq189 428 1e-115 seq613 132 1e-26 seq3536 93.3 1e-14 >seq189 Length=89223 Score = 428 bits (474), Expect = 1e-115 Identities = 387/484 (80%), Gaps = 6/484 (1%) Strand=Plus/Plus Query 35435 CAGTCCTTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCC 35494 ||| | |||||||| ||| ||||||| ||||| ||||||||| |||||| |||||||| Sbjct 69267 CAGCCGTTGCAGGTCAAGCTGCTCGATCCGCGCTTCGGCGATACCTGGCCGCTGCCGGCC 69326 Query 35495 TATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGA--TGA 35552 ||||||||||| ||| || || |||||||||| || || ||||| |||| | | Sbjct 69327 TATGCCACCGAGCACAGCGCCGGGCTGGACCTGCGCGCGGCGCTGGA--AACCGAACTCA 69384 Query 35553 CGTTGCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACC 35612 | |||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||||| Sbjct 69385 CTCTGCAGCCGGGCGATACGGCGCTGATTCCCAGCGGTATCGCCATCCACATCGCCGACC 69444 Query 35613 CGCAGCTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTAC 35672 || | ||| ||| ||| | |||||||||||||| || |||||||| ||||||||||| | Sbjct 69445 CGAACCTGGCCGCCGTGGTGCTGCCGCGCTCGGGCCTGGGCCATCGCCACGGCATCGTGC 69504 Query 35673 TCGGCAACGGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCT 35732 | |||||||| ||||| || ||||| || ||||||||||| || || |||||||| ||| Sbjct 69505 TGGGCAACGGCACCGGGCTGATCGACGCCGATTACCAGGGCCCGCTGCTGATCAGCGCCT 69564 Query 35733 GGAATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGA 35792 |||| |||||||||||| ||||||| | ||||||||||||| || ||||||||||| Sbjct 69565 GGAACCGCGGCCGCGAGCCCTTCACGCTGCAGCCGGGCGACCGCATCGCGCAGCTGGTTG 69624 Query 35793 TCCTGCCGGTCGTGCGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCG 35852 | ||||| ||| |||||| || ||| || ||||| |||||| ||||||||| | | Sbjct 69625 TGCTGCCCATCGCACGCGTAAGCCTGCAGGTAGTGGATACTTTCACCGACAGCGCCAGGG 69684 Query 35853 GCGCGGGTGGATTCGGTCACACCGGCGTGCGCTGAC--TGGCTAAGTCAGATGAGCAAGG 35910 | ||||||||||||| || ||||| |||||||||| || |||| |||||||||| Sbjct 69685 GAACGGGTGGATTCGGCCATACCGGGGTGCGCTGACCAGGGGGAAGTTCCATGAGCAAGG 69744 Query 35911 CCAA 35914 | || Sbjct 69745 CGAA 69748 >seq613 Length=108671 Score = 132 bits (146), Expect = 1e-26 Identities = 314/460 (68%), Gaps = 22/460 (5%) Strand=Plus/Plus Query 35441 TTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCC 35500 ||||| | ||| | |||||||| || ||||| | | ||| |||||||||| ||| Sbjct 59559 TTGCAAGCCAAGATCCTCGACCCCCGCATCGGCAACGAATTCCCGCTGCCGGCCTACGCC 59618 Query 35501 ACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACT---GGAGG-CGCCGATGACGTT 35556 || || | || ||| | |||||||||||| || | ||| | ||| || || Sbjct 59619 ACACCAGGCTCCGCCGGCCTCGACCTGCGTGCCATGCTCAAGCAGGACACCG-TGC--TT 59675 Query 35557 GCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCA 35616 | | || ||| | | |||||||| | |||| | ||||| | ||| ||||||| Sbjct 59676 GAA-CCAGGCCAGACCATTCTGATTCCGACCGGCCTGTCGATCTACGTGGGCGACCCGGG 59734 Query 35617 GCTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGG 35676 ||| ||| |||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct 59735 CCTGGCGGCGCTGATCCTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTCCTCGG 59794 Query 35677 CAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGG 35734 |||| ||| || || ||||| |||| |||||||| |||| || | | |||| Sbjct 59795 CAACCTGGT--GGGGCTGATCGACTCGGACTACCAGGGCGAGTTGATGGTGTCCTGCTGG 59852 Query 35735 AATCGCGGCCGCGAGGCCTTCACCATCGAGCCG--GGCGACCGGATTGCGCAGCTGGTGA 35792 || || |||| || |||| ||| |||| ||||| || ||||| || || ||| Sbjct 59853 AACCGTGGCCAGACCGCGTTCAATATC--GCCGTCGGCGAGCGCATTGCCCAACTCGTGC 59910 Query 35793 TCCTGCCGGTCGTGC--GCGTAGGCTTGCGAG-TGGTGGACACTTTCGTCGACAGCGCGC 35849 | | ||||| |||| ||| | ||| |||| |||| || |||| ||| | | Sbjct 59911 TGGTACCGGTGGTGCAGGCGCA--CTT-CGAGCTGGTCGAAGAGTTCGACGAAACACAAC 59967 Query 35850 GCGGCGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACT 35889 ||||||| ||||| ||||| || ||||| | |||||| Sbjct 59968 GCGGCGCAGGTGGCTTCGGGCATTCCGGCAGCCACTGACT 60007 >seq3536 Length=803 Score = 93.3 bits (102), Expect = 1e-14 Identities = 226/336 (67%), Gaps = 10/336 (3%) Strand=Plus/Plus Query 35487 TGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGC 35546 |||| ||||||||||| | ||| || ||| |||| | || || || || || | Sbjct 303 TGCCAGCCTATGCCACACCCGGCAGCGCTGGCCTGGATTTACGCGCTTGCCTCGATGCAC 362 Query 35547 CGATGACGT--TGCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCT 35604 | | ||| | | |||||||| | ||| | || | |||| | |||||||| || Sbjct 363 CTCT--CGTCATCAAACCGGGCGAAACCCATCTGGTACCAACCGGCCTGGCGATCCACCT 420 Query 35605 GGCCGACCCGCAGCTGTGC-GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACG 35663 ||| |||||| | | || ||| |||||||||||||| || | || ||| |||| Sbjct 421 GGCTGACCCGG-GTTACGCCGCGATGATCCTGCCGCGCAGCGGCATGGGACATAAACACG 479 Query 35664 GCATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTT 35721 ||||||| || || ||| |||| ||||| ||||| | ||||||||||| ||| | Sbjct 480 GCATCGTCCTGGGGAACTTGGTA--GGCCTGATCGACTCCGATTACCAGGGCCAATTGAT 537 Query 35722 GATCAGCACCTGGAATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGC 35781 | | || ||||||||||||| | ||||| || | || || || | || Sbjct 538 GGTATCGACATGGAATCGCGGCCAGACAGAATTCACGCTCAACCCCATGGAACGCCTGGC 597 Query 35782 GCAGCTGGTGATCCTGCCGGTCGTGCGCGTAGGCTT 35817 ||| |||| ||| | |||||| ||| || ||||| Sbjct 598 GCAATTGGTCATCGTCCCGGTCCTGCAAGTCGGCTT 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149117710986270