Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq374 87.8 1e-12 seq21 87.8 1e-12 seq553 84.2 1e-11 >seq374 Length=102525 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || |||||| |||||| || || ||||||||||| | | || |||| || | || Sbjct 623 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGC 564 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || |||||||| || || || ||||| |||| ||| | || || |||||| || ||| Sbjct 563 TTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTT 504 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || |||| | ||||| | ||||| || || ||||| || || || || Sbjct 503 GTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTG 444 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || ||||| Sbjct 443 AGAGTCTTTACGAAAATTTGCAT 421 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || |||||| |||||| || ||||||||||| || | || |||| || | ||| Sbjct 395 TGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGC 336 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| || || ||||| || || || |||| ||||| ||| || |||||| || || Sbjct 335 TTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTA 276 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || |||| | ||||| | ||| ||||| | || || || || || || Sbjct 275 GTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGTG 216 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || || || || |||||| Sbjct 215 AGGGTCTTGACAAAGATTTGCATG 192 >seq21 Length=10696 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| |||||||||||||||| | |||| ||||| || |||||| || Sbjct 3251 GCCCGTTCCCCTGGCTGTGGTTTCGCTGCAACGTAGTTAGGGACAGTGGGAATCTCATTT 3310 Query 25959 ATCCTTTCATGCGCGTCACTAATTAG 25984 |||| ||||||||||||||||||||| Sbjct 3311 ATCCATTCATGCGCGTCACTAATTAG 3336 >seq553 Length=5624 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||||| | | | |||||||| Sbjct 2896 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGC 2837 Query 20020 CTTA 20023 |||| Sbjct 2836 CTTA 2833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905043440737