Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19 291 1e-73 seq1288 127 3e-24 >seq19 Length=879724 Score = 291 bits (322), Expect = 1e-73 Identities = 810/1225 (66%), Gaps = 28/1225 (2%) Strand=Plus/Minus Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA--TCTTGCGCTTCCAGGCTAT 62540 ||| || ||||||| ||||| || || | ||||||| | | |||| | | || || | Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCA--CTTT 585862 Query 62541 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 ||||||| || | || ||||| || ||||| ||||| || ||||| | ||| | | Sbjct 585861 CAAATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTG 585802 Query 62601 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62660 |||| || | | | || || ||| |||||| | |||||||||||| ||| |||| Sbjct 585801 GTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAA 585742 Query 62661 TTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62720 ||||||| || || | | | | ||||| | | ||| || |||||| Sbjct 585741 TTTTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACT 585682 Query 62721 GCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 585681 CTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGT 585622 Query 62781 --TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 62838 | | | | ||| | ||| || || || ||||| || || |||||||||||||| Sbjct 585621 CTTTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAA 585564 Query 62839 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 62898 |||||| || || || |||| ||||| ||||| | | | || || || || Sbjct 585563 ATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGT 585504 Query 62899 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT--- 62955 ||||||||| || || | ||| || ||| | || | || |||| || | ||| Sbjct 585503 TTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACG 585447 Query 62956 -GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63014 | | || || || ||||||| | ||| || ||||| || | || || || Sbjct 585446 GGCACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAA 585389 Query 63015 TGT-CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 | | ||||||| || ||||| ||||| | || ||| ||||||| || | || Sbjct 585388 TCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACC 585329 Query 63074 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTC 63132 | | |||| || || ||| | |||||| || ||| |||| |||||||| | | |||| Sbjct 585328 CTTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTC 585270 Query 63133 CTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || |||||| || || || || || | ||| | |||||| || Sbjct 585269 TTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGG 585213 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63249 |||| ||| ||||| | | | || ||||| ||| ||||| || | || | || Sbjct 585212 CTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGC 585153 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 ||| | ||| | ||| ||||||| || | ||| |||||| || || || || || Sbjct 585152 GGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACC 585093 Query 63310 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63369 ||||| ||| ||||||| || ||| || || ||| || || ||||| ||| Sbjct 585092 AATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTG 585033 Query 63370 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 63429 || ||| ||| | ||||||| ||||| || || || || ||||| || ||| ||| Sbjct 585032 TGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCAT 584973 Query 63430 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 63489 | | |||| ||| ||| ||||||||| | | || | ||||||||||| || || Sbjct 584972 GGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGG 584913 Query 63490 AGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 63549 | || || |||||||| ||| | || || ||||| |||| || || || Sbjct 584912 GGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAAT 584853 Query 63550 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 ||| || ||||| ||||| || |||||||| |||| || || || | ||| || || Sbjct 584852 ATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT 584793 Query 63610 CTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63668 |||| || |||||||| || ||||||||||| | |||||||| |||||||| | | Sbjct 584792 -TTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGA 584734 Query 63669 ATGAAAAGTCTCGTTCGTAAATAAT 63693 || ||| || | || |||||||| Sbjct 584733 ATCCAAAATCCCTGTCATAAATAAT 584709 Score = 219 bits (242), Expect = 5e-52 Identities = 579/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 32368 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 32427 ||||||| || |||||||||||||| || || ||||| ||||| |||| | || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 32428 TTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 32487 | ||||| ||||| || |||||||| ||| ||| ||||| || | |||| ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 32488 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 32547 | |||| ||||| ||||| || ||||| | ||||| || |||||| || || | Sbjct 584015 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 583956 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 583955 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 583896 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 | || ||| | ||| || || | |||| | | || || || | Sbjct 583895 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 583836 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | || || || | ||||| ||||| ||| || || || ||| || || || |||| Sbjct 583835 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 583776 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATTCCT 32786 | ||||| | ||||| | ||| || || || || | | ||| | |||||||| ||| Sbjct 583775 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 583717 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 32846 || ||||| || || || | | | || || || ||| ||| ||||| Sbjct 583716 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 583660 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 ||||| || || || || ||||||||||| | ||||||| |||| || || | Sbjct 583659 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 583600 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | |||||| | | |||||||| ||| ||||| |||| || ||| |||| || || Sbjct 583599 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 583540 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 |||||||| || || || || || || || || | || |||| || ||||||||| Sbjct 583539 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC- 583481 Query 33027 GTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 | || | ||| |||| | |||||||| || || |||||||| || |||||||| | Sbjct 583480 GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 583422 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 | | || ||| || |||| ||| ||| ||| || | ||| | || | Sbjct 583421 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 583362 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 583361 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 583302 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||||| ||| | |||| ||| || |||| |||||| Sbjct 583301 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 >seq1288 Length=22276 Score = 127 bits (140), Expect = 3e-24 Identities = 254/371 (68%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| || || |||||||| || |||||||| | || || | ||||| || || || Sbjct 677 CAGACAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGT 618 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||| ||| |||| ||||| ||||| || ||||| || || || ||| || || || || | Sbjct 617 GAGGCCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGA-GCAGAACGAGCCCGAGA 559 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCA 32834 |||| || || || || || ||||| || | || | ||| || || | |||| || Sbjct 558 AGAAGATGCCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCA-AAGCTGCGCGAGTTT 500 Query 32835 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 32894 | ||||| ||||| ||||||||||| || || || ||||| || || Sbjct 499 TCGATCCAGCGGATCGCCCACTCGGCCTTCTTGCGCACGGCGGGGATCGTCTCGATGGCG 440 Query 32895 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 || ||||| | | || | || || | || || || |||| ||||| ||| Sbjct 439 TTGAAGAGCTGGGCCTTGCGCGCGGTGTCCTTGATGTAGGTGTCGATCAGCAGACTGTAC 380 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 | || || || |||||||| ||||| ||||| || ||||||||||| | ||||||| Sbjct 379 GTCTCGGAGTGGATGTTTTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGG 320 Query 33015 ATCTGTACTTC 33025 || || || || Sbjct 319 ATTTGCACCTC 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633550206029200