Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq426 118 9e-22 seq396 105 6e-18 seq1210 98.7 9e-16 seq1971 96.9 3e-15 seq374 91.5 1e-13 >seq426 Length=101737 Score = 118 bits (130), Expect = 9e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| |||||||||||| | || || || ||||||| | || || ||| Sbjct 289 ACAATGCAAATCTTTGTAAAGACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGGGT 230 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||||| | ||| | || | ||| ||||| || || ||||| ||||| Sbjct 229 TCTGATACTATCGAAAATGTCAAGACTAAGATTCAA-GACAAGGAGGGTATTCCTCCTGA 171 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || ||||| ||| | || |||| ||||| | ||||| Sbjct 170 CCAGCAGCGTCTAATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCTGATTA 111 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || || ||||| || || Sbjct 110 CAATATTCAGAAGGAGTCCACTCTCCA 84 >seq396 Length=82706 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| ||||||||||| | || || || ||||||| | || || ||| Sbjct 289 ACAATGCAAATCTTTGTAAAGACCCTAACTGGCAAGACCATCACCCTAGAGGTTGAGGGT 230 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || |||||||| | ||| | || | ||| ||||| || || ||||| ||||| Sbjct 229 TCCGATACTATCGAAAATGTCAAGACTAAGATTCAA-GACAAGGAGGGTATTCCTCCTGA 171 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || ||||| ||| | || |||| ||||| | ||||| Sbjct 170 CCAGCAGCGTCTGATTTTCGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTTCTGATTA 111 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 |||||| || || || ||||| || || Sbjct 110 CAATATCCAGAAGGAGTCCACTCTCCA 84 >seq1210 Length=15033 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || ||||||| | || || ||| || Sbjct 12919 ATGCAAATCTTTGTAAAGACTCTCACAGGCAAGACCATCACCCTTGAGGTTGAGGGATCG 12860 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 12859 GACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 12800 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| | || ||||| Sbjct 12799 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 12740 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 12739 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCT 12708 >seq1971 Length=9940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| |||| || ||| || Sbjct 4827 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCC 4886 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 4887 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 4946 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| || | || || | |||||| | ||| ||||| Sbjct 4947 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 5006 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 5007 ATCCAGAAGGAGTCCACTCTTCA 5029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 4371 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCG 4430 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 4431 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 4490 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| ||| | || || | ||||| | ||| ||||| Sbjct 4491 CAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAAC 4550 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 4551 ATCCAGAAGGAGTCCACTCTTCA 4573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| || ||| || Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || || || |||||| Sbjct 4203 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAA 4262 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || | || || | ||||| | |||||||| Sbjct 4263 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAAC 4322 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 4323 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCT 4354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || ||||||| |||| || || || Sbjct 4599 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGGCTCC 4658 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 4659 GACACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAA 4718 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| || | || |||| ||||| | || ||||| Sbjct 4719 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAAC 4778 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 4779 ATCCAGAAGGAGTCTACCCTCCATCTCGTCCT 4810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| ||||||| || ||||||| | || |||||| Sbjct 3911 AACTATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGGG 3970 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || ||| | ||| || ||| ||||| || || || || || || Sbjct 3971 ATCCGATACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGA 4030 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | ||||| || || || || | || || | ||||| || ||| || Sbjct 4031 CCAACAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTA 4090 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||| | || || Sbjct 4091 CAACATCCAGAAGGAGTCTACCCTCCATCTCGTCCT 4126 >seq374 Length=102525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||| | || || || |||| || | || || ||| || Sbjct 421 ATGCAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCC 480 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| ||| ||| ||||| || || ||||| || |||||| Sbjct 481 GATACCATTGAGAACGTCAAGACAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAA 540 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | |||||| | |||||||| Sbjct 541 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAAC 600 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 601 ATCCAGAAGGAGTCCACTCTCCA 623 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || || || | ||||| | || || ||| || Sbjct 649 ATGCAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCG 708 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | || | ||| ||||| || || ||||| || || || Sbjct 709 GACACCATTGAGAACGTCAAGACTAAGATTCAA-GACAAGGAGGGCATTCCCCCCGATCA 767 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||||||||| || | || || | |||||| | ||||||||| Sbjct 768 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAA 827 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| || || Sbjct 828 CATTCAGAAGGAGTCCACTCTCCA 851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433273461202505