Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq374 140 3e-28 seq1971 127 2e-24 seq426 125 6e-24 seq396 116 3e-21 seq1210 102 7e-17 seq1077 91.5 1e-13 >seq374 Length=102525 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || ||||||| || || || | | Sbjct 649 ATGCAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCG 708 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || ||||||||||||||||| ||||| ||||||||| Sbjct 709 GACACCATTGAGAACGTCAAGACTAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAA 768 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| |||||| | |||||||||||| Sbjct 769 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAAC 828 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 829 ATTCAGAAGGAGTCCAC 845 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || | ||| | || || || | || Sbjct 421 ATGCAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCC 480 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||| || || ||||||||||||||||| ||||| ||| Sbjct 481 GATACCATTGAGAACGTCAAGACAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAA 540 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| |||||| | || ||||||||| Sbjct 541 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAAC 600 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 601 ATCCAGAAGGAGTCCAC 617 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||||| ||||| ||| | | Sbjct 193 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTCGAAGGCTCG 252 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || ||||||||||| || || ||||| || Sbjct 253 GATACCATTGAGAACGTAAAGACTAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 312 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || | ||||| ||||||| |||| |||||||| Sbjct 313 CAGCGTCTAATTTTCGCTGGAAAGCAACTTGAGGACGGCCGCACCCTCTCGGATTACAAT 372 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 373 ATCCAGAAGGAGTCCAC 389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| ||||| || || ||||| || || || ||||| Sbjct 49 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAG 108 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| |||||| | ||||| || |||||||| || || |||||| | ||| Sbjct 109 CAACTCGAGGATGGCCGCACTCTTTCCGACTATAACATTCAGAAGGAGTCCACCCTCCAT 168 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || | || | || ||||| Sbjct 169 CTCGTCCTCCGTCTTCGTGGAGG 191 >seq1971 Length=9940 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || || ||| | || Sbjct 4599 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGGCTCC 4658 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| ||||| ||||| ||| Sbjct 4659 GACACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAA 4718 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| ||||||| |||| || |||||| Sbjct 4719 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAAC 4778 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | ||| | || | || | || |||||| Sbjct 4779 ATCCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTCCGTGGAGGT 4826 Score = 120 bits (132), Expect = 3e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 || ||| ||||||||||| || || || | ||||| || || |||| ||||| |||| Sbjct 3907 TTTTAACTATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGG 3966 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | |||||||| | || | |||| || || || ||||||||||| || || | Sbjct 3967 AGGGATCCGATACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCC 4026 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 |||| ||||| ||||| || || || || || ||| | ||||| ||||||| | |||| Sbjct 4027 CCGACCAACAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCG 4086 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | |||||||| || || || || ||| | ||| | || | || | || |||||| Sbjct 4087 ACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTCCGTGGAGGT 4142 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || ||||||| || || || | || Sbjct 4827 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCC 4886 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || ||||| ||| Sbjct 4887 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 4946 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| | ||||| |||||| Sbjct 4947 CAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 5006 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 5007 ATCCAGAAGGAGTCCAC 5023 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 4371 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCG 4430 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 4431 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 4490 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| || | ||||| ||||||| ||||||| |||||| Sbjct 4491 CAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAAC 4550 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 4551 ATCCAGAAGGAGTCCAC 4567 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || |||||||| || || || ||||| ||| Sbjct 4203 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAA 4262 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| ||||||| |||| ||||||||| Sbjct 4263 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAAC 4322 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || | || | || |||||| Sbjct 4323 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCCGTGGAGGT 4370 >seq426 Length=101737 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| |||| || || || |||| ||||| || || | Sbjct 286 ATGCAAATCTTTGTAAAGACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGGGTTCT 227 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||||||||||||||||||||| || || || Sbjct 226 GATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCAG 167 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| || | |||||| ||||||| | || |||||||| Sbjct 166 CAGCGTCTAATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACCCTTTCTGATTACAAT 107 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 106 ATTCAGAAGGAGTCCAC 90 >seq396 Length=82706 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || |||| || || || |||| || || || || || Sbjct 286 ATGCAAATCTTTGTAAAGACCCTAACTGGCAAGACCATCACCCTAGAGGTTGAGGGTTCC 227 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||||||||||||||||||||| || || || Sbjct 226 GATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCAG 167 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| || | |||||| ||||||| | || |||||||| Sbjct 166 CAGCGTCTGATTTTCGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTTCTGATTACAAT 107 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 106 ATCCAGAAGGAGTCCAC 90 >seq1210 Length=15033 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| ||||| || || | Sbjct 12919 ATGCAAATCTTTGTAAAGACTCTCACAGGCAAGACCATCACCCTTGAGGTTGAGGGATCG 12860 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| || || ||||| ||| Sbjct 12859 GACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 12800 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| | || || |||||| Sbjct 12799 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 12740 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 12739 ATCCAGAAGGAGTCCACCCTCCACTTGGT 12711 >seq1077 Length=16265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| ||||| || || || || |||||||| Sbjct 5303 AAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAGCGCCTCATCTTCGCCGGCAAG 5362 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| | || || |||||||| || || || || ||| | || Sbjct 5363 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 5422 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || ||||||| || Sbjct 5423 TTGGTGCTCCGCCTGCGCGGTGG 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419675172902755