Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq44 100 6e-16 seq56 91.5 3e-13 >seq44 Length=77107 Score = 100 bits (110), Expect = 6e-16 Identities = 326/499 (65%), Gaps = 12/499 (2%) Strand=Plus/Minus Query 292975 TCAACAGTCACCGCGATAGCATTTGCCGCGGGCTTAGATCTGACATAATACACAAGTGTT 293034 || ||||| | | ||| |||| || |||| || ||||| || |||| || Sbjct 10978 TCGACAGTGAACTGGATGGCATCGGCAGCGGCACGAGTTCTGAGGTAGTACATTCCAGTC 10919 Query 293035 TTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTT--CAGTGTGGGAG 293092 || |||||||||||||| |||||||| |||| || |||| |||| || || | Sbjct 10918 TTCAGACCCTTCTTCCAAGCGTAGAAGTGCATTGAAGTCA---ACTTGGCAAAGTTTGGC 10862 Query 293093 T-GGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | ||| | ||| | ||| | ||| |||| |||| |||||||||||| || ||||| Sbjct 10861 TCGGCGATGAACACGTTGAACGACTGGCTCTGGTCGATAAAGGCACCACGGTCGGCAGCC 10802 Query 293152 AGGTCAATCACTGTCTTCATAGA--GATCTCCCACGATGTCTTGTACACTGCCTTGACAT 293209 | ||| || | || | | || ||||||||| |||||||| | |||| | | Sbjct 10801 ATGTCGATGAGGGTA--CGTTGACGGATCTCCCAGACAGTCTTGTAGAGCTCCTTTAACT 10744 Query 293210 CAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCA 293269 | | ||||||| | |||||||| || || || || || ||||||||||||| Sbjct 10743 CGTCAGGAATGCCCTGGATGTTCTGGATGGAACCCTTGTGAGCGATGATCTGGTTCTTCA 10684 Query 293270 TTGTCTCG-GACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACG 293328 | ||| | | ||| || | | ||||| || || || | |||||| || Sbjct 10683 TC-TCTGGTGTCCAGAGGTCAAGCTCCATGAGGTCCTTGAGCAGCTGCTTGTTGACGACA 10625 Query 293329 GGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCC 293388 | |||||| || ||||| |||||| ||||| ||||| ||| |||||| ||| Sbjct 10624 GTGAACTCTCCGGCGAGGACGCGACGACTGTAGATGTTGCTGGTGTACGGTTCGAACGCC 10565 Query 293389 TCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAG 293448 || ||| ||||||| || || ||||||||||| | ||| | ||| | | Sbjct 10564 TCGTTGTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGGCATGGGTGCAACCATCAAACTG 10505 Query 293449 TTCCTCACACCCTTCTTGA 293467 || | | ||| |||||| Sbjct 10504 TTGCGGAGACCAGTCTTGA 10486 >seq56 Length=468132 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 19752 GAAGGCGCCCTCAAGCTCAAGGAGATCAGTTACATCCACGCAGAGGGTATTTCGGCAGGC 19811 |||||||| |||||||||||||| ||||| ||||||||||| |||| | |||| ||| Sbjct 88358 GAAGGCGCGCTCAAGCTCAAGGAAATCAGCTACATCCACGCCGAGGCCTATCCGGCCGGC 88299 Query 19812 GAACTTAAGCACGGGCCTCTTGCTCTTCTCAACAAGCCTGTTCCGGTTGT-AGTGTCTCT 19870 ||||| |||||||| || || || || | | | ||| | || || || | || | Sbjct 88298 GAACTCAAGCACGGCCCGCTGGCCCTGGTGACCGAGCACATGCCCGTCGTCACCATCGCA 88239 Query 19871 GGCAGACCAC-AGTTGCCTGGATAAGCTAAAGTCAAACATCGACGAAGTGCTTGCCCGTG 19929 || | || || || ||||| ||||| ||||| ||||| | ||||||| ||||| | Sbjct 88238 CCCA-AGGACGAGCTG-CTGGAAAAGCTGAAGTCCAACATGCAGGAAGTGCGCGCCCGCG 88181 Query 19930 G 19930 | Sbjct 88180 G 88180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027700802095007