Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq757 253 5e-63 seq447 84.2 5e-12 >seq757 Length=83746 Score = 253 bits (280), Expect = 5e-63 Identities = 558/819 (68%), Gaps = 33/819 (4%) Strand=Plus/Plus Query 988 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCTaaaaaaaaCCACCCTGCCAGGTGG 1047 ||||||||||||||||| || |||||||||| ||| ||||||||||||| | ||||| Sbjct 49518 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCC---AAAAAACCACCCTTGCCGGTGG 49574 Query 1048 TGAG--ATGGAACGTAGGCATGAACAGAACCCGAAATCCCCCGCGACAACAACGTCCCGC 1105 | | ||||| |||||||||||| |||| |||||||| | ||| |||| || Sbjct 49575 TTATGAATGGACGCTAGGCATGAACAAAACC-GAAATCCCGCTTGACC-CAACCCTGCGA 49632 Query 1106 TGGGAGTGGATCAAATACCCAGCTCCGCGCCAGGGGGTCGTCCCTGGCCGAGGTGGCCCG 1165 ||||| ||||||||||||| | || || || | || |||| || || |||| || Sbjct 49633 TGGGAATGGATCAAATACCAA-CTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCG 49691 Query 1166 CTCCCTCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCCTCGG 1224 || ||||| | ||| | || ||||| ||||| |||| | | || || || Sbjct 49692 TGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCG-CGA 49749 Query 1225 GTAGAGCGCGCCATCGCTGCTGTACTCGACCTCAGCCCCCTAGTGCTGTGGCCTGAGCGC 1284 | ||||| || || || || || | ||||| || | | ||||||| || || Sbjct 49750 ATGGAGCGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGT 49809 Query 1285 TGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCCAATCGCTCGGAGACCTTGCAGG-C 1343 ||| || ||| | | || | || || | ||| | || | |||| | Sbjct 49810 TGGAACGCAAACG-GCACCCCA-----CACCGT---ATTCGGGTGCAGCGC--GCAGAAC 49858 Query 1344 ATATGTCAGACATAT-GCCAAGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGC 1402 | | || || | | |||||| || | | |||| | || || || | Sbjct 49859 ACAACGCA-ACTTCTAGCCAAGAGC------ATAACCCAGCTTA--TGCCCTTCGACACC 49909 Query 1403 GTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1462 ||||| ||| | ||| || | |||||| ||| || || || || || | ||||| Sbjct 49910 GTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACAT 49969 Query 1463 CTTCGATGTTCCGCAGCCAGCCCGCGCTATACCCGGCGAGTGCAACTATGCCGCCCAGGT 1522 |||| ||| || ||||||| | ||||| || || | ||||| ||||||| ||||| Sbjct 49970 CTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGT 50029 Query 1523 CAGCGAGCTGGTCAGCGAAATTCTGAAGGCCGCCAACCTCGACCGTTACGAGGTCGCCGC 1582 ||| || ||| ||||||| |||||||| | || | || ||||||||||| | | || Sbjct 50030 CAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGC 50089 Query 1583 CCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAG 1642 |||||||| ||| | ||||||||||||||||| ||| ||||||| ||||| |||||||| Sbjct 50090 ACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAG 50149 Query 1643 TCCCGCCCGAGCTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1702 || |||||| | || || ||| |||| ||||| | ||| | || || || || || || Sbjct 50150 CCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTG 50209 Query 1703 CGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCGTGGCCTATGG 1762 || ||| | | ||| |||||||||| || || || ||||||||||| || || Sbjct 50210 TAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGG 50269 Query 1763 CCGAGACGCACTGCTCGCCGAGCTGGGCCGCCTGGAGCG 1801 || || ||||| ||| ||||| || || |||| ||| Sbjct 50270 TCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 50308 Score = 129 bits (142), Expect = 1e-25 Identities = 136/175 (78%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 8925 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8982 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 56916 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 56974 Query 8983 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAA--ACCAAGA 9040 ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| | | Sbjct 56975 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 57034 Query 9041 CAGACCGCCAGCGCCGCCTGGCGCGGGAACGCCAACGAGCGAAGCGCGAGCGCGA 9095 ||| ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 57035 CAG--CGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 57087 Score = 118 bits (130), Expect = 2e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9342 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9401 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57316 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57375 Query 9402 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATTGACCAGGTA 9461 | ||||| ||||| ||||| |||||||| ||| | ||| |||||||| | | ||| Sbjct 57376 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57435 Query 9462 CTGGTCGAACTCCAGCGTCTGGGCTGG------AAACCGAAGAGCAACCGGCAAGGCCGG 9515 |||| ||| | || |||||||| ||||||| | || ||||||||| Sbjct 57436 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57492 Query 9516 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9575 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57493 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57552 Query 9576 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTC 9635 ||| ||| | ||| ||||| || |||||| |||||||| |||||||||| ||||| Sbjct 57553 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57612 Query 9636 GAGCGGGTCGAGTGGCTGGAC 9656 ||||| || || ||||| ||| Sbjct 57613 GAGCGAGTGGAATGGCTAGAC 57633 Score = 89.7 bits (98), Expect = 1e-13 Identities = 277/418 (66%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 177 ATCCATCGCCCAAGCCAGACAACGCGCCCAATGATATCCAAGTCAGAAAGCTGGTCCTTG 236 ||||| | ||| ||| || ||||| ||||| || |||| ||| | || ||| || Sbjct 48700 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48759 Query 237 GGGACGACCATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAAC 296 ||||| ||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 48760 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48819 Query 297 TGCCGTTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCA 356 ||||| || | | || || ||||| || || | | ||| || || || | || || Sbjct 48820 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 48878 Query 357 TCCCGCACG-GTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGG 415 |||| || | | || || ||||| || | || | |||||||| || || Sbjct 48879 TCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCC 48938 Query 416 TTCCATGGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTT 475 ||||| || || || | || | | ||| |||| | | | || | || | ||| Sbjct 48939 CTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTT 48998 Query 476 GCTCAAGC-TGTA-GCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAG 533 || |||| ||| ||| || || |||||||| || || || || |||||||||||| Sbjct 48999 GC-GAAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAG 49056 Query 534 CTTCCATGTCCCGCGCTGACCCT-CGCGTCATACAGGGGGACGTAGACATATTGGTCC 590 || |||||||| || || | ||||| |||| || ||||| | || | |||| Sbjct 49057 GCGCCGTGTCCCGCACT-ACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 49113 Score = 87.8 bits (96), Expect = 4e-13 Identities = 349/537 (65%), Gaps = 18/537 (3%) Strand=Plus/Plus Query 4255 GTTGCCCGGCCTGGTCTGCTTCTACGGCCCGTCCGGCTTCGGCAAATCCGTTTCGGCCGC 4314 |||||| |||||||| | |||||| | |||| | |||||| |||| || || Sbjct 52509 GTTGCCTGGCCTGGTAGTGATGTACGGCGCAAGCGGCCTTGGCAAAAGCGTTGGCGCTGC 52568 Query 4315 CTGGGTCGCCAATCGCCGCCGCGCCTACTACGTCCAG-GCCAAAAGCGTCTGGACCCGCA 4373 || | ||| || | | ||| ||||| ||||| || ||| | | ||||| | Sbjct 52569 CTTCGCCGCAAACCAGCACCGTGCCTATTACGTGGAGTGCCGCGA-CACCTGGAGTAAAA 52627 Query 4374 AGCACACGCTGAAGTCGATCCTGGGTGAAATGGGCATCAAGCCGGCTGGCACGATCCCGG 4433 || ||| | | ||||| | || ||| ||||| | ||||| || || ||| Sbjct 52628 AGGCTTTCCTGCACGCCATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGG 52687 Query 4434 AAATGGCCGACCAGATCGCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACG 4493 |||| |||||||||||| ||| | || || ||||| ||||||||| | ||||||| Sbjct 52688 TGATGGTCGACCAGATCGCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACG 52747 Query 4494 AAATGGACCACCTGGTC------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACG 4547 | || | ||||| || |||| | |||| || |||| || ||| ||| Sbjct 52748 ACGTGCAATACCTGCTCGAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACA 52801 Query 4548 AGTCCAGCCAAGCCTCCATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTGAAGA 4607 | ||||| ||| |||| | ||||||||||| ||| |||| | ||| || Sbjct 52802 ACGCCAGCGAAGGGACCATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGA 52861 Query 4608 AGTTCGAACGCTTCCATGGCCGCGTGCTGAGCTGGGTTCCGGCCCAGCCAGTCTCCCTGG 4667 || | |||||| | ||| ||| |||||| ||||| || || |||| | | |||||| Sbjct 52862 AGCTGGAACGCCTGCATAACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGG 52921 Query 4668 AGGACGCCCGCAACCTGGCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGACCTG 4726 | || ||| |||||| | ||| | |||||| | || ||||||| || || Sbjct 52922 ACGATCTGCGCGCCCTGGC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTG 52980 Query 4727 CTCGCGCACTTGGTGAAGAA-GTCACTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 4782 || | || || ||||| || | | |||| | ||||| || ||||| ||||| Sbjct 52981 CTGGATGACCTGCGCAAGAAGGTGAAT-GGCTGCCTGCGTCGTGTAGCGGTCAACCT 53036 Score = 87.8 bits (96), Expect = 4e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 6397 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAACTGCTGGCCGCCGAGGTGGCCCGCAGC 6456 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 53781 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53840 Query 6457 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6516 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 53841 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53900 Query 6517 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTG 6576 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53901 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53960 Query 6577 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6627 | || ||||| || ||| ||| |||| | || ||| ||| | ||||| Sbjct 53961 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 54011 >seq447 Length=48793 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11033 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11090 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 11091 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11150 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11151 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11207 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11208 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11267 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11268 C 11268 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116392124719398