Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1971 95.1 1e-14 seq374 91.5 1e-13 >seq1971 Length=9940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||| || || || |||||||| ||| Sbjct 4144 ATACCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 4085 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || ||||| || || |||||| | ||||||||||||||||| || Sbjct 4084 GACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGG 4025 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||| |||| || Sbjct 4024 GGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCC 3965 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || ||||| ||||| Sbjct 3964 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || ||||||||||| Sbjct 4372 ATACCTCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 4313 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || |||||| | ||||||||||||||||| || Sbjct 4312 GAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGG 4253 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | || | |||||| | | ||| Sbjct 4252 GGGATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCG 4193 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || || || |||||||| Sbjct 4192 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||| || || || |||||||| || Sbjct 4828 ATACCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCC 4769 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || || ||| | ||||||||||||||||| || Sbjct 4768 GAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGG 4709 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| |||||||| | |||| Sbjct 4708 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCG 4649 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| || || || || || ||||| Sbjct 4648 ACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 4600 ATACCTCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCG 4541 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || |||||||| || || || ||||||||||||| ||||| || Sbjct 4540 GAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGG 4481 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | | || Sbjct 4480 GGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCA 4421 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || || |||||||| Sbjct 4420 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 >seq374 Length=102525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || ||||||||||| Sbjct 650 ATACCTCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCA 591 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || || || || || || ||||||||||||||||||| || Sbjct 590 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGG 531 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | |||| ||| |||| | || Sbjct 530 GGAATACCCTCCTTGTCCTGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCA 471 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || ||||| ||||| ||||| ||||| Sbjct 470 ACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||||||| | ||| || || || || || || || Sbjct 845 GTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 786 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||||||||| || || |||||||| || ||||| |||||| || Sbjct 785 GCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTG 726 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || |||| || | || || || || || || Sbjct 725 ACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTC 666 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| ||||| ||||| Sbjct 665 TTTACGAAAATTTGCAT 649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || || || || |||||||| || ||| Sbjct 194 ATGCCTCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCG 135 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || ||||| || |||||| | ||||||||||| ||||| || Sbjct 134 GAAAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGG 75 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| |||| | |||| ||||||| | |||| Sbjct 74 GGAATGCCCTCCTTGTCCTGGATCTTAGTCTTTACGTTCTCAATAGTGTCGGAGCCTTCG 15 Query 114333 ACGTCCACGGT 114343 || |||| ||| Sbjct 14 ACTTCCAGGGT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420081521753124