Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq716 241 3e-59 seq152 118 3e-22 >seq716 Length=76659 Score = 241 bits (266), Expect = 3e-59 Identities = 388/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 14785 CGCCGTCCACCATCGCCATGGGCGCAGTGGCCGCGGTGAAGCCGTGGGAGTCTCCAGGCA 14844 ||||||| || | ||||| | ||| ||||| ||| |||| ||||| || |||| Sbjct 17076 CGCCGTCGTCCCTGGCCATCGCCGCGCTGGCCAAGGTCAAGCAATGGGAAAGCCCGGGCA 17135 Query 14845 ACCAAGGCGTGCTGATTC-AGGATGTGGCTCGAGTCATCGACTACAACATCCTGGACAAG 14903 | || || | || | | || ||| | || || | || ||||||||||| |||| Sbjct 17136 ATCA-GGTGACCTTCGCCGAAGACGTGTCCCGCGTGGTTGAGTACAACATCCTCGACACC 17194 Query 14904 AGCACCGAGGGTGACCTGCTCAACCGTAACGGCGTGAGCTACTTTGCTCGCACTAGCATG 14963 |||||| || |||||||||||||| ||||||||||||||| || ||||| | | | Sbjct 17195 TCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCCCGCACCATCCTC 17254 Query 14964 GGCGGCTTTAGTCTTATCGGCAACCGCACGGTGACGGGCAAGTTTATCTCGTTTGTCGGC 15023 ||||| || || | || |||||| | | || |||||||| ||| | || ||| Sbjct 17255 GGCGGTTTCTCGCTGCTGGGTAACCGCTCCATCACCGGCAAGTTCATCAGCTACGTGGGC 17314 Query 15024 CTCGAGGACGCCATCGCTCGCAAGCTGG--AAGCAGCCAGCCAGCGTGCTATGTCCAAGC 15081 || || || || ||| |||||||||| ||| ||| ||||| || ||| ||||| Sbjct 17315 CTGGAAGATGCGATCAGCCGCAAGCTGGTCAAG--GCCGGCCAGAAAGCCATGGCCAAGA 17372 Query 15082 AGCTGACCAAGAGCTTCATGGAGCAGGAAATCAAGAAGATTAACCTGTTCATGCAAGACC 15141 | ||||||||| |||||||| ||||| ||||| || ||| | ||||| || Sbjct 17373 ACCTGACCAAGTCGTTCATGGACCAGGAGGTCAAGCGCATCAACGACTGGCTGCAAACCC 17432 Query 15142 TTGTCGCGGCTGAAATTATCCCAGGCGGTGAAGTGTACCTGCACCCGACTCTTAACACGG 15201 | || || | || | || || ||||| ||||||||||||||| | |||| | Sbjct 17433 TGGTGGCCGACGAGACCATTCCCGGCGGCAGCGTGTACCTGCACCCGGAATTGAACAGTG 17492 Query 15202 TCGAGCGGTATAAGAACGGCTCCTGGTACATCGTGATCGATTACGGCCGTTACAGCCCGA 15261 ||||| ||| ||||||||| |||||| |||||| ||||| |||||||| ||| |||| Sbjct 17493 TCGAGAAGTACAAGAACGGCACCTGGTTCATCGTCATCGACTACGGCCGCTACGCGCCGA 17552 Query 15262 ACGAGCACATGATTTTCCACCTGAATGCGGTAGACCGCATCGTCGAAGAGTTCATTGAGG 15321 |||| |||||||||| || || || || || ||| |||| ||||| | |||| Sbjct 17553 ACGAACACATGATTTATCAACTCAACGCCCGCGATGAAATCATCGAGCAGTTCCTGGAGG 17612 Query 15322 AGGTGCTGTAATG 15334 | || || ||||| Sbjct 17613 ACGTTCTCTAATG 17625 Score = 84.2 bits (92), Expect = 5e-12 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 11300 TGAGTATGAGGTTCGGGAGATCGGCTTTTACCTCGAGTCCGGCACCTTGCTGGCCGTGTA 11359 |||||||||| || | ||| | || |||||||| | ||| ||||||||||| || || Sbjct 14932 TGAGTATGAGATTGGAGAGTTTGGGTTTTACCTGGCTAGCGGGACCTTGCTGGCAGTTTA 14991 Query 11360 CTCGGTACCGAACACCCTGCTCACGTATAAGTCGGCCAACAGCAGCTGGATC-CAGAAGT 11418 || || | | |||||||| || || ||||| | || || || ||||||| Sbjct 14992 TTCTGTTGCCGGGAAACTGCTCACCTACAAAGCGGCCG-CGGCCCGTGTATTGCAGAAGT 15050 Query 11419 TCACTCTGGATATCTCGCCGCTGCCAACTGACAGCGTGACCGTCGTGGTCGGTACGGAAA 11478 |||| ||||| | | || ||||| || || || || || || || |||| ||||| Sbjct 15051 TCACGCTGGACCTAACACCACTGCCGGTCGATAGTGTCACGGTAGTAGTGGGTATGGAAA 15110 Query 11479 ACATCAATCTGATGATGACCGAGGAACTGGCCACCATGGCCACGGCCCAGATTGACAACA 11538 | | ||| | | || | || ||| ||||| | |||| || ||| | ||||| || | Sbjct 15111 ATCTTAATATTTTAATTGCAGAAGAATTGGCCGCTGTGGCTACAGCCAATATTGATAATA 15170 Query 11539 TGACCCGGCA 11548 || | || || Sbjct 15171 TGGCTCGTCA 15180 >seq152 Length=191884 Score = 118 bits (130), Expect = 3e-22 Identities = 294/437 (67%), Gaps = 22/437 (5%) Strand=Plus/Plus Query 21139 GCCGACCAAGGTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGT 21198 |||| | | ||||||||| | |||||| | |||| || || || ||| | || Sbjct 59320 GCCGGCTAGGGTTGAAGTGCTGAACGACACACATGGCGAGCTCGTACGGCTCTACAGGGT 59379 Query 21199 GGTGCAGCATCACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGA 21258 || | | ||||| || |||||||| || || ||| ||| || | | ||||| || Sbjct 59380 CGTTGCGAACCACCTGGACGAGTTCGTACGGCATTTCCGGTGGTCGTTGACTAGCCGGGA 59439 Query 21259 GATGTTCAAGTGGCTGGAC---GATAC-GCCCGTCGAGACCCTGACCGATATTCAGCGTG 21314 |||| | ||||| | | ||| | ||| ||||| || || || |||||||| | Sbjct 59440 AATGTACC----GCTGGGCCCAGTTACAGAACGTGGAGACGCTCACAGACATTCAGCGCG 59495 Query 21315 CTGCCCGGTTCTATTACCTGCAGCAGATGGGCTTCGGCGCCAAGATTACCGGCCGCACCT 21374 |||| |||||||||||||| ||| || | ||| |||| ||| | || |||| || Sbjct 59496 CTGCGCGGTTCTATTACCTCCAGAAGCTTTCCTTTGGCGGTAAGGTCACTGGCCAGACGC 59555 Query 21375 TTGGCACGGCCACCACTACGCCGCCAAAAC---TGAACCTGCTGCGCCTCGAG-GAGACG 21430 ||||| || | ||| || |||| | | ||||||||||| |||||| |||| Sbjct 59556 TTGGCGTGGGGCCGACT---GCGGCAAAGCGCATCAACCTGCTGCGGCTCGAGCAAGAC- 59611 Query 21431 CTAAGCCAGGCGCACCTACGCCTGAGCCGTGTTTACGTTGAGCACCTGGACTGGCAGGCG 21490 || ||| | |||||||| || ||| | || || ||| ||||| | |||||| | Sbjct 59612 CTCAGCGATGCGCACCTGCGTCTGCATGGCGTCGTGGTGGAGAACCTGCAATGGCAGAAG 59671 Query 21491 TGCATGGAAAAGTACGACCGACCG---CACACCCTGTTTTACCTCGACCCGCCGTACTGG 21547 ||| | | ||||||||| |||| || || || || || ||||| || |||||| Sbjct 59672 TGCGTCAAGAAGTACGAC--ACCGATTCA-ACGCTCTTCCTTCTTGACCCCCCTTACTGG 59728 Query 21548 CAGACCGAGGGCTACGG 21564 ||| ||||| || || Sbjct 59729 GCGACTGAGGGATATGG 59745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122093825416266