Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq44 421 1e-112 seq1288 363 3e-95 seq19 105 1e-17 >seq44 Length=77107 Score = 421 bits (466), Expect = 1e-112 Identities = 1248/1895 (66%), Gaps = 71/1895 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| || || | ||||| || || ||||||||||| || ||||| || | Sbjct 10971 TGAACTGGATGGCATCGGCAGCGGCACGAGTTCTGAGGTAGTACATTCCAGTCTTCAGAC 10912 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | | ||| |||| || |||||| | |||| ||| | || ||||| ||| Sbjct 10911 CCTTCTTCCAAGCGTAGAAGTGCATTGAAGTCAACTTGGCAA-----AG-TTTGGCTCGG 10858 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 | | ||| ||||| |||||||||||||||| |||| | || || || | Sbjct 10857 CGATGAACAC------GTTGAACGACTGGCTCTGGTCGATAAAGGCACCACGGTCGGCAG 10804 Query 243921 CCATGGTGATGAGG-TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 ||||| ||||||| | | | ||| ||||| | | |||||||||| ||| | Sbjct 10803 CCATGTCGATGAGGGTACGT-TGACGGATCTCCCAGACAGTCTTGTAGAGCTCCTTTAAC 10745 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 | || || | || | ||||||||| | || |||||||| |||||| |||| | | Sbjct 10744 TCGTCAGGAATGCCCTGGATGTTCTGGATGGAACCCTTGTGAGCGATGATCTGGTTCTTC 10685 Query 244040 ATGTTATCGT-TCCACAGGCCCAAGCGCTCCA---GCGCCTCGACCAGGTGCCTGTTCAC 244095 || | | || |||| ||| | | |||||| | ||| || ||| ||| |||| || Sbjct 10684 ATCTC-TGGTGTCCAGAGGTCAA---GCTCCATGAGGTCCTTGAGCAGCTGCTTGTTGAC 10629 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 || |||||||| | || ||||| || ||||| ||||||| || ||| |||| Sbjct 10628 GACAGTGAACTCTCCGGCGAGGACGCGACGACTGTAGATGTTGCTGGTGTACGGTTCGAA 10569 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 ||| |||| || || ||||| | || || || |||||||| | |||| || Sbjct 10568 CGCCTCGTTGTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGGCATGGGTGCAACCATCAA 10509 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTG-AGCTCGTTCCAGTCCCACATGC 244274 |||||| | | || | | || | |||| || | ||||||||| | Sbjct 10508 ACTGTTGCGGAGACCAGTCTTGATAATTTTG-GTCTTCAGGGAGGACCAGTCCCAACGGG 10450 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 ||| || | | | |||||||||| ||| || | || |||| | | Sbjct 10449 GGGAGGGGGTCACAC---------CCCACATGTCGTGCTGGAGGACACCACGGCTGGCAG 10399 Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGCTCTCGTCG 244393 | ||| | ||| | ||| | |||||||||| ||| |||| ||| || | Sbjct 10398 GAGAGCCGGGGAAGGAGGAATAGTGGCCGTCGCGCTCGGCAAGCTCGGCAGAGGCAGT-G 10340 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC-GCGGGCCTTGCCGCA 244452 || || | | ||||||| ||||| |||| |||||| | | || | | || | | Sbjct 10339 AGAGCAGAGAAGTAGATAGTCTCAGCGATCTCCTTGTTGAGAACAGCAGCACCAGCAG-A 10281 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 | ||| || | | ||| |||||||||||||| || ||||| | ||||| ||||| Sbjct 10280 GTCGAAAGGCAGACGCATGGCAATGAAGACGTCGGCAAGACCCTGGATACCGATACCGAT 10221 Query 244513 GGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 ||| | ||| || ||| ||| || || || | ||| ||||| |||||| ||||| Sbjct 10220 GGGACGGTGACGAAGGTTAGAGGTGCGTGCCT-CTACCACTGGGTAGTAGTTGCGGTCGA 10162 Query 244572 TCACCTTGTTGAGGTTGCGGGTGATCATGC-GGACGAC-----GTCGGCCAGCAGCTGAA 244625 | | ||||||||| || || ||||| || || | || | |||| | | | || Sbjct 10161 TAATCTTGTTGAGATTACGAGTGATGATCTTGGTCAACTCAAAGAGGGCCTGGTGGTCAA 10102 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGCGAC 244683 || | | ||| || | || | ||||| | |||||||| ||| | ||||| Sbjct 10101 AGGTG-----GCAGGCATGCCAGGGG-TGGTG---CGCACAAACT--TTGGCAAGGCGAT 10053 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||| |||||||| ||||| || || || | ||||||||| |||||||||||||| Sbjct 10052 AGAGGCGAGGTTGCACACGGCGACTTCATCGGGAGAGGTGTACTGAACAATCTCGGTGCA 9993 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||||| ||||| |||||| || |||| ||| || ||||||||| |||||| ||||| Sbjct 9992 AAGGTTGCTGCAAGAGATGGTTCCGAGGTTCTGCTGGTTGGACTTGCTGTTGCAAGCGTC 9933 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||| ||| |||| |||||||||| ||| | ||| || | |||||| Sbjct 9932 CTTGTAGAGGATGTAGGGGGTACCGGTCTCGATCTGTGACTCGATGATAGCGAACCAGAG 9873 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT---GCCTCGTAGCGGGTGTACAG 244920 ||| |||||| || || | |||| ||| | ||||| || |||||| || Sbjct 9872 ATCCTGAGCCTTTACGGTGCGACGAGAGAGGCCAGGTGTCGCCTCATACTTGGTGTAGAG 9813 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 | |||||| |||||| |||| | ||||| || | || || | ||| Sbjct 9812 CTCGCGGAACTCATCTCCCCAGCACTCGGCGAGGCCAGGTGCCTCATTGGGACAGAAGAG 9753 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 |||||| || | | || ||| | || |||||| || || | || |||||| || | Sbjct 9752 ACTCCAGTCAGAGTTGGTCTCGACACGCTCCATGAACAGATCAGAGACCCAGAGCGCGTA 9693 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||||||||| | || | | ||| ||| ||| |||||| | || || | || || Sbjct 9692 GAAGAGGTCGCGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAACTC 9633 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 |||||||||| ||||||| ||||| | |||||| || | ||| || ||||| ||| Sbjct 9632 AAAGACGTCGGCGTGCCATGGCTCGAGGTAGACGGCAAAGGCACCCTTGCGCTTTCCGCC 9573 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||||| || | | || | | ||||||| ||| || | || || | |||| Sbjct 9572 ACCCTGGTCGACGTAGCGGGC-AGTGTCATTGAAGACGCGAAGCATTGGTACGAGTCCGT 9514 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | ||| ||||||||| || |||||||| || || | | || ||| ||||| | Sbjct 9513 TCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCGGCTGGCACGGATCTTGTGGATGGCGA 9454 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT--AT 245337 | || || || ||||| ||| |||||||||||||| ||| | |||||| | || Sbjct 9453 TACCGAGACCACCGGCAGACTTTGAGATGAGGGCGCACTGCTTAA--GTGTCTCGTAGAT 9396 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 || || ||||||||| |||||| | || || ||||| ||||||| |||||| |||| Sbjct 9395 ACCGTCGATGCTGTCCTCCTTCATCTGGACGAGGAAGCAAGAGGACATCTGGGGTGTGGG 9336 Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCC 245457 | | | ||||||||| || || || ||||||| |||||| || ||||||| Sbjct 9335 GGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCGTAAAGAGACGCTTCGAGAGCTGGTG 9276 Query 245458 GTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAG 245517 ||| || | || ||||| |||| ||||||||||| || | | | |||||| Sbjct 9275 GTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGTGGATACCGAGAGAGACACGCATGAG 9216 Query 245518 GGTGTGCTGGGGCGTCTCGATGGGTCCCTCG--GGTCCCTTGAGCATGTAGGAGCGCTCG 245575 | || ||||| ||||||| | ||| | | | | ||| |||| ||||||| Sbjct 9215 CATCTGTTGGGGACGCTCGATGATCTCGTCGTTGATGC--GGTGCAGGTAGCTGCGCTCG 9158 Query 245576 AGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 || |||||||| || || | ||| ||||||| Sbjct 9157 AGAGTCTTGAAGCCGAAAAAGTCATAGTCAAAGTC 9123 >seq1288 Length=22276 Score = 363 bits (402), Expect = 3e-95 Identities = 605/860 (70%), Gaps = 33/860 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| ||||||||| ||||||||||||||| || || |||||| || Sbjct 105 ATCAAGTACCCCGACATCTGGAGCATGTACAAGAAGGCCGAGGCGTCGTTCTGGACGGCG 164 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTG-TCT--GAGAACGAA 42401 |||||||| ||||| || ||| ||| |||||| | | || || ||||| Sbjct 165 GAGGAGATCGACCTCGCGGGCGACCTCTCCGACTGGGACACCAAGCTCAACGACAACGAG 224 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| ||| | || |||||||| || || || |||||||| ||||| ||| Sbjct 225 CGCCACTTTATCACCAACGTGCTCGCCTTCTTTGCGGCGTCGGACGGCATCGTCAACGAG 284 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||||| ||||| | |||||| |||||||| | ||||||||||||||||||||| Sbjct 285 AACCTCGCCACGCGCTTCATGTCCGAGGTGCAAATCCCCGAGGCGCGCTGCTTCTACGGC 344 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 ||||| || ||||| || ||| | ||||| ||| |||| ||| || |||| ||| Sbjct 345 TTCCAAATCGCCATCGAAAACATCCACTCCGAGACGTACAGTCTGCTGATCGACACCTAC 404 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGG---GCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 ||| ||| ||| ||| || | ||| ||||| ||||| |||||||| ||| | Sbjct 405 ATCAAGGACACCGC---GCGCAAGGCCCAGCTCTTCAACGCCATCGAGACGATCCCCGCC 461 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGC 42698 | |||||||| || |||||| || ||||||||| | | || |||| | || | | Sbjct 462 GTGCGCAAGAAGGCCGAGTGGGCGATCCGCTGGATCGAAAA-CTCG-CGCAGCTTT-GCC 518 Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | || || || ||| ||||||||||||||||||||||||||||| | ||| ||| Sbjct 519 GAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 578 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || |||| ||| ||||||||||||||||| || || Sbjct 579 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCACGGCCTCACCTTCTCGAACGAGCTGAT 637 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG-AGC-CACC-T 42874 |||| | |||||||| || || | ||||||||||| || || | |||| ||| |||| | Sbjct 638 CAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGTCTGCTCTACTCGAAGCTCACCGT 697 Query 42875 CAGGC------ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 | || || |||| | | || | | |||||| || ||||| | Sbjct 698 CTCGCGTCTGGACGCGCCCACCA---------TCGAGTCGATCATCCGCGACGCCGTCGC 748 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 ||||||||||||| |||| || |||||||||| |||| ||||||||||| | Sbjct 749 CTGCGAGAAGGAGTTCATCACCGAGGCGCTGCCCGTCGACCTGATCGGCATGAACAGCCG 808 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 | |||| | |||||||| ||| | |||||||| ||| ||| | | || | | Sbjct 809 CTACATGGCCCAGTACATCGAGTTCTGCGCCGACCGTCTGCTGGTCGCCCTCGGCTACCG 868 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | |||||||| | | ||| ||||| | ||||||| ||||| | || |||| Sbjct 869 CAAGATCTACAACGCCGCCAACCCGTTCGAGTGGATGGAGATGATCTCTCTCCAGCGCAA 928 Query 43109 GACCAACTTTTTCGAGAAGC 43128 ||| ||||| ||||| |||| Sbjct 929 GACAAACTTCTTCGA-AAGC 947 >seq19 Length=879724 Score = 105 bits (116), Expect = 1e-17 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 ||||| || || || || || ||||||||| || ||||| ||||| || | ||| Sbjct 583415 ATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGCAGTGAACTTC 583474 Query 42480 ATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||| || || ||| ||| || || || || || || ||||||||||| || | Sbjct 583475 ATGAGCGAAGTACAG--CTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGG 583532 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 | ||| | |||||||| || || ||| || | || || || ||||| | | Sbjct 583533 AAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAG 583592 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | || |||||||| | ||| | |||||| | || || | ||||| || || || | Sbjct 583593 AAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAAT 583652 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | |||||| ||| | || || || | ||| | |||| || || Sbjct 583653 GGGCATTGCGCTGGATTGAG------GGCGGAAATTTTGCCGAACGTTTGGTGGCTTTCG 583706 Query 42718 CCGCCGTCGAGGGCATCTTCTTC-TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||| || || ||||| |||||| |||| | |||| || ||||||||| | || | Sbjct 583707 CCGCAGTGGAAGGCATTTTCTTCAGCGGGAG-CTTCTGTTCGATCTTCTGGTTGAAAAAA 583765 Query 42777 A-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || || ||||| || || | || ||| || |||||| | Sbjct 583766 AGAGGCCT-GATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGAT 583824 Query 42836 GCATAGGGACTTTGCCTGCCTCCT 42859 |||| | || ||||||||||| || Sbjct 583825 GCATTGTGAATTTGCCTGCCTGCT 583848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944217297613520