Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq2221 298 2e-76 >seq2221 Length=11212 Score = 298 bits (330), Expect = 2e-76 Identities = 676/999 (68%), Gaps = 38/999 (4%) Strand=Plus/Minus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || |||||||| | ||| || ||||| ||||| ||||| | ||| |||| ||||||||| Sbjct 2983 TCTTCGAACATGACGTACGGGTAGCCGGACTCGAACTGGATCTCGGCGACGGTCTGGAAG 2924 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTAC 60029 | || || |||| ||| |||||| ||| | || | | | | | |||| Sbjct 2923 AACTCGCGCGCGTTGATCTTGGTCTTCTTGATGCGCGGGTCGTCGACCATCTCGCGGTAC 2864 Query 60030 ATCTCGGTTACGGAGAACTCG--GACAGTGACTTTCCGTACACCTTATTGATGTCATAAG 60087 ||||||| || |||| ||| || | || ||||| ||||| | || ||| || | Sbjct 2863 TTCTCGGTGACCGAGATGTCGCCGAACGGAACG--CCGTAGACCTTCTCGACGTCGTACG 2806 Query 60088 GAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGA 60147 | ||||| ||| ||| |||| | |||||| || |||||||| || ||||| | Sbjct 2805 GCGAGAACAGGTACATGTCCTCGTCGTTCTTGGCGAGTTCGAACGTGATGTCCGGAACCA 2746 Query 60148 TAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTAT 60207 || || || || || ||||| || ||||||||||| |||||||| || |||||||| | Sbjct 2745 CGACGCCCAGCGACAGCGTCTTGATGCGGATCTTCTCATCGGCGTTCTCGCGCTTGGTGT 2686 Query 60208 CCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGC 60266 | ||||| |||| | |||||||||||||| ||||| | || ||||| || |||||||| Sbjct 2685 CGAGGAAGCGCATG-ATGTCGGGGTGGTGGGCGTTGAGGTACACCGCACCGGCGCCCTGA 2627 Query 60267 CTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATG 60326 | ||||| || ||||| | |||| |||||| ||||| || | ||||||||| |||||| Sbjct 2626 CGCGCACCGAGCTGGTTGGCGTAGCTGAAGCTGTCTTCGAGGAGCTTCATCACGGGGATG 2567 Query 60327 ACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTCCTGCCTCGCGGAGGTTGG 60384 | || |||| ||| ||||||| | ||| ||||| || || | |||||||| ||| | Sbjct 2566 ATGCCGGAGGACTG--GTTCTCGATCTGCTTGATCGGCGCACCCGACTCGCGGATGTTCG 2509 Query 60385 AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG---AGAGTCCTGAACGA 60441 | | | | |||| ||||| || ||||| || ||||| || |||| || | | Sbjct 2508 ACAGCAGCAGGGCGACGCCGCCGCCGCGCTTGGAGAGCTGCAGGGCCGAGT--TG-ATGC 2452 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || |||| ||| ||||| |||| | | || | |||||| || | | || Sbjct 2451 CGCGGGCGATCGACTCCATGTTGTCTTCGATGCGCAGCAGGAAGCAGCTGACGAGTTCGC 2392 Query 60502 ----CTGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAGATTCCC 60557 ||||| | | || ||||||||||| ||||| || || ||||||||| || Sbjct 2391 CGCGCTGCGCCTTG----CCGGCGTTGAGGAATGTCGGGGTGGCCGGCTGGAAGCGACCG 2336 Query 60558 TTGATAATGAGATCCACAAGGGACTCAGCG---TGCTCGAAGTCTTCGCTGTAGTGGATG 60614 ||| || || || || | | ||| | ||| | | ||| | | || | Sbjct 2335 GAGATGATCTCCTCGACGAGCGCGACCGCGAGCTTCTCATCGCCGTCGGCGAGGCCGAGG 2276 Query 60615 GCCGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCCATCGTTAGTCTTC 60674 || || | || || || || ||| |||||||| ||||||||||| ||| |||||| Sbjct 2275 GCGGTCATCACGACGCGGTCCTCGAAGCGCTCGAGGTAGCGCTTGCCGTCGAACGTCTTC 2216 Query 60675 AAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAAGCGGAACTTGTGT 60734 | | |||| | ||| |||| | ||| || | | | |||| ||| |||||||| | Sbjct 2215 AGCGTGTAGCTCGTGTAGTACTTGAACGCGCCGAGGAACGTCTCGAAACGGAACTTCTTG 2156 Query 60735 CCGTAGGCCTGTTTCATGAGTCTCT---TTAGGTCC-TCGAAGCCGTAGCGAAGGACGAC 60790 ||||| || | | |||| ||| | | ||| |||| | | || | |||| | Sbjct 2155 CCGTACGCGAGGTCGTTGAGCTTCTGGATGAACTCCATCGAGTACTTCTCG-ATGACGGC 2097 Query 60791 ATCCTTGTCCCATAGTTGGACTTCCTCTGTGAGGTGATCCACCTTCTCCTCTAGGGAGTG 60850 |||| | |||| ||| ||| ||||| |||| ||||| || ||||| Sbjct 2096 -GCCTT----CGTAGTACTCCTT-CTCCACGAGGTAGTCCAGACGCTCCTTGAGCGAGTG 2043 Query 60851 AAAGAATACGGTGTTCTTGTTGACGTGCTCCAGGAAGTA 60889 ||||| || ||||||| ||| ||||||| ||||||||| Sbjct 2042 GAAGAACACCGTGTTCTGGTTCACGTGCTGCAGGAAGTA 2004 Score = 120 bits (132), Expect = 1e-22 Identities = 250/368 (68%), Gaps = 16/368 (4%) Strand=Plus/Minus Query 58452 CGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATG 58511 ||||||||||| | | ||| | |||||| |||||||||||||| ||| ||| Sbjct 3952 CGGATGTAGTAGATCGTCTTGATGCCCTTGCGCCATGCGTAGATCTGCGCCTTGTTGATG 3893 Query 58512 TCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAA 58571 || ||||| || || || || ||||||||| || ||||||| |||||||| || Sbjct 3892 TCACGCGTGGTGGCGGTGTCCTTGAAGAACAGGGTCAGAGACAGACCCTGGTCGACGTGC 3833 Query 58572 GGAGATGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCG--CT 58627 | | || | || || | || |||| | | ||| ||||| |||| ||| || Sbjct 3832 TGCGTGGCGGCCGCATAGGTGTCGATGACCTTCTCGTAG--CCGATCTCGTACGCGTCCT 3775 Query 58628 ATCAATTGATTCTACATTCTCATTGGTCA----CTCCGTACTGAGGGTAATAGACTCGAC 58683 | | | || | || || || |||| | ||| ||||| ||||| |||| Sbjct 3774 GGTAGT--ACTCCAGGTTGTCGTTCGTCATGAACGCCGCC----GGGTAGTAGACGCGAC 3721 Query 58684 CAAGCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGG 58743 | ||||| || |||||||| | ||| | || | | ||||| ||||| | ||||| Sbjct 3720 CGAGCTTGCCTTCCTTGCGGATCTCGATCTTCGACGCGATCGGGTGGATCGACGACGTGG 3661 Query 58744 CATGGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAA 58803 | ||| ||||||||||| || ||||| || |||| ||||| |||||||||||||| | Sbjct 3660 AGTTGTTGATGTACGAGATCGACCCGGTCGGCGGGACGGCCTGCAGGTTCTGGTTGTAGA 3601 Query 58804 TACCATGC 58811 | || ||| Sbjct 3600 TGCCGTGC 3593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225699589803380