Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq197 181 2e-40 seq1971 127 5e-24 seq1210 109 1e-18 seq198 104 6e-17 seq396 91.5 3e-13 seq374 91.5 3e-13 seq19 84.2 5e-11 >seq197 Length=202601 Score = 181 bits (200), Expect = 2e-40 Identities = 341/500 (68%), Gaps = 6/500 (1%) Strand=Plus/Plus Query 167024 ATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 167083 ||| |||||||| || |||| ||||||||| || || || ||||| || |||||||| Sbjct 166549 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 166608 Query 167084 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 167143 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 166609 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 166668 Query 167144 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 167203 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 166669 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 166728 Query 167204 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 167260 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 166729 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 166785 Query 167261 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 167320 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 166786 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 166845 Query 167321 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 167380 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 166846 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 166905 Query 167381 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 167440 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 166906 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 166965 Query 167441 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACGTA 167500 ||||||||||| || || || || |||||||| |||||| || || || Sbjct 166966 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 167025 Query 167501 TATCTTCGAGTGTTTTTCCA 167520 ||| || ||||||||||||| Sbjct 167026 TATTTTTGAGTGTTTTTCCA 167045 >seq1971 Length=9940 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||| | || || || ||||| || ||||||| Sbjct 4141 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 4082 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| ||||| || ||||||||||| ||| Sbjct 4081 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4022 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 ||||| || || |||||||| || | || ||||| || || | |||| ||| || Sbjct 4021 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCG---GATCCCTCC 3965 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 3964 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || ||||| |||| ||| || || ||||| || ||||||| | Sbjct 4597 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4538 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || || ||||| |||||||| || ||| Sbjct 4537 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 4478 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 || || || || |||||||| || | || ||||| || || | || ||| || Sbjct 4477 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTC---CGAGCCCTCA 4421 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 4420 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| |||| ||| || || ||||| || ||||||| Sbjct 5053 CCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 4994 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| || ||||||||||| ||| Sbjct 4993 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4934 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || | || ||||| || || | ||| || || Sbjct 4933 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACC 4874 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 4873 TCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | ||| ||||| ||||| || | || ||||| ||||| Sbjct 4333 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAA 4274 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| ||||| ||||| || |||||||| || | || ||||| Sbjct 4273 ATGAGACGCTGTTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTC 4214 Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| || || ||||| ||||| ||||| ||||| || |||||| Sbjct 4213 TCGATGGTGTC---CGAGCCCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 4157 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4156 ACGAAGATCTGCAT 4143 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||| | || || || ||||| || ||||| | | Sbjct 4825 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 4766 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| || ||||||||||| || ||| Sbjct 4765 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGG---TCGGGG 4709 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| ||| Sbjct 4708 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCG 4649 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || |||| ||||||||||| || ||||| Sbjct 4648 ACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 >seq1210 Length=15033 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || ||||| | Sbjct 12693 CCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 12752 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||||||||||||||| ||| Sbjct 12753 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGG 12812 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 ||||| || || |||||||| || || || ||||| || || | || |||| || Sbjct 12813 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTC---CGATCCCTCA 12869 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || |||||||| || || || ||||| Sbjct 12870 ACCTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq198 Length=142842 Score = 104 bits (114), Expect = 6e-17 Identities = 234/347 (67%), Gaps = 16/347 (5%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| || || | || ||| ||| || || ||||| | |||| |||| || | || Sbjct 43270 CCAGGCCTCCACCTCGGAGATGTTCGGCAAGGTGCAGGCGGTTCCGCAGATCGAGAGCAC 43329 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGT 72533 ||||| ||||| || ||||| |||||||| || ||| | || || ||||||| | || Sbjct 43330 GCCGTTCTATCCCCGTAGCCCCTACGGTGTCGCCAAGCTCTATGCGCATTGGATGACCGT 43389 Query 72534 AAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG 72593 || |||||||||| || ||||| | | | || | ||| |||||| ||||| Sbjct 43390 GAA--TTACCGTGAGAGCTACAACATCTTCGGTTCCAGCGGGATCCTTTTCAACCACGAA 43447 Query 72594 AGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 72653 || || |||| | |||| || || || || ||||| | ||| ||||| | Sbjct 43448 AGCCCGCTGCGAGGTCGCGAGTTTGTAACCCGAAAGATCACCGACTCGGTTGCGAAGA-- 43505 Query 72654 TTCAA--TGGTG----TCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGAT 72707 |||| ||| | ||| |||| | | || ||||| | || ||||| | ||| Sbjct 43506 -TCAAGCTGGGGATGCTCG---AATGTCTCGAGCTTGGTAACCTCGACGCCAAGCGTGAT 43561 Query 72708 TGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCA 72754 ||||||| ||| ||||| ||||| |||| |||||| ||||||||| Sbjct 43562 TGGGGATTTGCCAAGGAGTACGTGGAAGGCATGTGGCGGATGCTGCA 43608 >seq396 Length=82706 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || ||||| || | ||| || || |||||||| || || | Sbjct 60 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAA 119 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || ||||| ||||||||||| || | || Sbjct 120 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 179 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || | || || ||||| |||| |||| || || Sbjct 180 ATACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCGGAACCCTCAACC 239 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || || || ||||| || || || |||||| Sbjct 240 TCTAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACAAAGATTTGCATT 287 >seq374 Length=102525 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| ||||| || | ||| || || ||||| || || || | Sbjct 647 CCTCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 588 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || ||||| ||||||||||| || ||| Sbjct 587 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTG---GTCGGGG 531 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | |||| || Sbjct 530 GGAATACCCTCCTTGTCCTGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCA 471 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || |||||||| ||||| || ||||| Sbjct 470 ACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 >seq19 Length=879724 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 52877 GAGAAATTTTACTTTACACCGAGTAGCAATCCG-TATGAAGTTTTTGAAACGAAATATGG 52935 ||||||||||| ||||| || || | | | ||| |||| ||| |||| || |||| Sbjct 591083 GAGAAATTTTATTTTACCCC-AGGCGATTTAGGCTATAAAGTATTTAAAACCAAGTATGC 591141 Query 52936 AAAACTAGGCGTGCTGATTTGCTGGGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTG-- 52993 ||| | || ||||||||||||||||| ||||||| | |||||||| | | ||| Sbjct 591142 CAAAATTGGTGTGCTGATTTGCTGGGACCAGTGGTATCCCGAAGCAGC---ACGGCTGAC 591198 Query 52994 -GCTCTAGAAGGCGCTGATTTTATTGTATACCCCACCGCCATCGGCTCGG 53042 || || || || |||||| | || ||||| ||||| ||||||| || Sbjct 591199 CGCGCTGATGGGTGCAGATTTTCTGGTTTACCCGACCGCAATCGGCTGGG 591248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179498314396706