Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq197 187 5e-42 seq198 104 5e-17 >seq197 Length=202601 Score = 187 bits (206), Expect = 5e-42 Identities = 344/503 (68%), Gaps = 6/503 (1%) Strand=Plus/Plus Query 149168 ATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 149227 ||| || |||||||| |||| ||||||||| || || || ||||| || |||||||| Sbjct 166549 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 166608 Query 149228 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 149287 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 166609 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 166668 Query 149288 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 149347 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 166669 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 166728 Query 149348 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 149404 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 166729 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 166785 Query 149405 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 149464 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 166786 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 166845 Query 149465 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 149524 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 166846 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 166905 Query 149525 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 149584 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 166906 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 166965 Query 149585 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACATA 149644 ||||||||||| || || || || |||||||| |||||| || ||||| Sbjct 166966 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 167025 Query 149645 TATCTTCGAGTGTTTTTCCATTG 149667 ||| || ||||||||||||| || Sbjct 167026 TATTTTTGAGTGTTTTTCCAATG 167048 >seq198 Length=142842 Score = 104 bits (114), Expect = 5e-17 Identities = 234/347 (67%), Gaps = 16/347 (5%) Strand=Plus/Plus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || || | || ||| ||| || || ||||| | |||| |||| || | || Sbjct 43270 CCAGGCCTCCACCTCGGAGATGTTCGGCAAGGTGCAGGCGGTTCCGCAGATCGAGAGCAC 43329 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGT 68522 ||||| ||||| || ||||| |||||||| || ||| | || || ||||||| | || Sbjct 43330 GCCGTTCTATCCCCGTAGCCCCTACGGTGTCGCCAAGCTCTATGCGCATTGGATGACCGT 43389 Query 68523 AAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG 68582 || |||||||||| || ||||| | | | || | ||| |||||| ||||| Sbjct 43390 GAA--TTACCGTGAGAGCTACAACATCTTCGGTTCCAGCGGGATCCTTTTCAACCACGAA 43447 Query 68583 AGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642 || || |||| | |||| || || || || ||||| | ||| ||||| | Sbjct 43448 AGCCCGCTGCGAGGTCGCGAGTTTGTAACCCGAAAGATCACCGACTCGGTTGCGAAGA-- 43505 Query 68643 TTCAA--TGGTG----TCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGAT 68696 |||| ||| | ||| |||| | | || ||||| | || ||||| | ||| Sbjct 43506 -TCAAGCTGGGGATGCTCG---AATGTCTCGAGCTTGGTAACCTCGACGCCAAGCGTGAT 43561 Query 68697 TGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCA 68743 ||||||| ||| ||||| ||||| |||| |||||| ||||||||| Sbjct 43562 TGGGGATTTGCCAAGGAGTACGTGGAAGGCATGTGGCGGATGCTGCA 43608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102734072777450