Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1210 122 9e-23 seq374 114 1e-20 seq396 109 6e-19 seq1971 104 3e-17 >seq1210 Length=15033 Score = 122 bits (134), Expect = 9e-23 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| |||||| || || ||||| || | ||||| || | Sbjct 12704 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 12763 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||| ||||||| || | | |||||| Sbjct 12764 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTT 12823 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA---TCGACCGT 42169 |||| ||| || |||| || | | |||||| |||| || || || | || Sbjct 12824 GTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTC---CGATCCCTCAACCTCAAGGGT 12880 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| ||||| || || |||||||||||||||||||| Sbjct 12881 GATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq374 Length=102525 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| | || || || |||| || || ||||| |||||||| Sbjct 384 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCAGCGAA 325 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || |||||||||| ||| || || | | Sbjct 324 AATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTTACGTT 265 Query 42137 CGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | || || ||| ||| || |||| |||||||| ||||| || || ||||| Sbjct 264 CTCAATGGTATC---CGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTT 208 Query 42194 TACAAAGATTTGCAT 42208 |||||||||||||| Sbjct 207 GACAAAGATTTGCAT 193 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| || || || | ||||| || | || || || ||||| |||||||| Sbjct 156 CTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAA 97 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| ||||||||||||| || | || |||||||||| ||| || Sbjct 96 AATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 49 >seq396 Length=82706 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||||| || || || | || || || ||||| |||||||| Sbjct 95 CTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAA 154 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 || || ||||||||||| | || | | |||||||| | ||| | || || |||| Sbjct 155 AATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGT-CTTGAATCTTAGTCTTGACAT 213 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || || || | |||||||| ||||| ||||| ||||||| Sbjct 214 TTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGTTAGGGTCTTTA 273 Query 42196 CAAAGATTTGCATT 42209 |||||||||||||| Sbjct 274 CAAAGATTTGCATT 287 >seq1971 Length=9940 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 4790 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 4731 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||| ||||||| || | || |||||||||| ||| || |||| | Sbjct 4730 AATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 4671 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| ||| || |||| |||||||| ||||| || | ||||| || Sbjct 4670 CTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 4611 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 4610 GAAGATTTGCAT 4599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || || ||||| || || || Sbjct 4562 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 4503 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 4502 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 4443 Query 42137 CGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| ||| || || |||| |||||||| ||||| || || ||||| Sbjct 4442 CTCGATGGTGTC---CGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTT 4386 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 4385 GACGAAGATCTGCAT 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543142678017680