Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq374 132 5e-26 seq504 123 2e-23 seq1971 122 9e-23 seq426 113 5e-20 seq396 111 2e-19 seq44 93.3 4e-14 seq1210 91.5 1e-13 seq1077 91.5 1e-13 >seq374 Length=102525 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || ||||||||||| | | ||||| |||| Sbjct 633 AAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTC 574 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||||||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 573 CTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTC 514 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| || ||| | ||||| | | || || || | ||| | ||| Sbjct 513 CTGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGT 454 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| ||||||||||||||||| Sbjct 453 CTTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||||||||| | | ||||| |||| || |||||||||||| Sbjct 845 GTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 786 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||| || ||||| ||||| || || || ||||| || || ||| Sbjct 785 GCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTG 726 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | | || || || | ||| | ||||| || || | || Sbjct 725 ACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTC 666 Query 64427 TTTACGAAAATTTGCAT 64443 ||||||||||||||||| Sbjct 665 TTTACGAAAATTTGCAT 649 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || || |||||||| | || |||||| |||| Sbjct 405 AAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTC 346 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| ||||| || || |||| || |||||||||||||| || || || || || || Sbjct 345 CTCAAGTTGCTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 286 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || |||||| ||| | ||||| | | || ||||| | ||| | ||| Sbjct 285 CTGGATCTTAGTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGT 226 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || || || |||||||| Sbjct 225 CTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 193 >seq504 Length=56252 Score = 123 bits (136), Expect = 2e-23 Identities = 232/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 ||||||||||| || || || ||| | || |||||||| | ||||||||||| ||||||| Sbjct 35970 GGACTGCACGGATTCCACGTCCACCAGTTTGGCGACACCACCAACGGCTGCATGTCCGCC 35911 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 |||| || |||||||| || | | || ||||| || || | ||| |||||||||| Sbjct 35910 GGCGCCCACTTCAACCCCTTCGGCAAGGAGCACGGAGCCCCCACCGCCGACGTCCGCCAC 35851 Query 115481 GTCGGTGATCTGGGCAACGTCGAATCTGCGGGCTTCAACTCGCTCACCGAC-GTCAACAT 115539 ||||| || |||||||| |||| | |||| | | ||||| | | | Sbjct 35850 GTCGGAGACTTGGGCAACCTCGAGGCCCACGGCTCTGCCGCCGACACCGGCTCGCTCTCT 35791 Query 115540 GACGAGCGACTTAATGACGTTGTACGGCCCGAACAGTGTGCTCGGCCGCAGCTTAGTGGT 115599 ||| ||| | || || | | ||| |||| | | |||||||| | | || || Sbjct 35790 GACAAGC----TCATCACCCTCTTTGGCGAGAACTCTATCATCGGCCGCTCCATGGTCGT 35735 Query 115600 GCACGCGGACCGCGACGATCTCGGCCTTACCGATCA-TCCGCTAAGCAAAACCACGGGTA 115658 ||||| ||| |||||| ||||| || | || |||| ||||| ||||| ||| Sbjct 35734 CCACGCCGACGCCGACGACCTCGGTCTCGGAGGCCAGTCCG-ACAGCAAGACCACCGGTC 35676 Query 115659 ACTCGGGCGGGCGCCTGGCCTGCGGCATCATCGGCGT 115695 || | |||| || || || ||||| ||||| ||||| Sbjct 35675 ACGCCGGCGCTCGTCTCGCTTGCGGTATCATTGGCGT 35639 >seq1971 Length=9940 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | |||||| |||| Sbjct 4126 AGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 4067 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || ||||||| ||||| |||||||| || ||||| || || || Sbjct 4066 TCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 4007 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | ||||| || | || | |||| Sbjct 4006 TGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTC 3947 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || |||||||||||||| Sbjct 3946 TTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | || |||||| |||| Sbjct 4582 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 4523 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||||||| | ||||| |||||||||||||| || || || || || || Sbjct 4522 TCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4463 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | | || || || | || | |||| Sbjct 4462 TGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTC 4403 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 4402 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | || Sbjct 4810 AGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 4751 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| ||||||| ||||| |||||||| ||||| || || || || Sbjct 4750 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 4691 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | | || || || | || | |||| Sbjct 4690 TGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTC 4631 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || ||||| |||||||| Sbjct 4630 TTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | | ||||| |||| Sbjct 5038 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 4979 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| ||||||| ||||| |||||||| || ||||| || || || Sbjct 4978 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 4919 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | | || || || | ||| | |||| Sbjct 4918 TGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTC 4859 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || |||||||| ||||| Sbjct 4858 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || |||||| |||| ||||||||||| || Sbjct 4339 GTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 4280 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| ||||| |||||||| || || ||||| || || || || || ||| Sbjct 4279 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGTCTTG 4220 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | | || || || | || | |||||||||||| | || Sbjct 4219 ACGTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 4160 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4159 TTGACGAAGATCTGCAT 4143 >seq426 Length=101737 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||| |||||||| | | |||||| | || || || |||||||| Sbjct 90 GTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCA 149 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||||||||| |||||||| || || || ||||| || || ||| Sbjct 150 GCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTG 209 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| | || || || | || | ||||||||| || | ||| Sbjct 210 ACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTC 269 Query 64427 TTTACGAAAATTTGCATTTTAA 64448 ||||| || ||||||||| ||| Sbjct 270 TTTACAAAGATTTGCATTGTAA 291 >seq396 Length=82706 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || |||||||| | | |||||| | || ||||| |||||||| Sbjct 90 GTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCA 149 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||||||||| |||||||| || || || ||||| || || ||| Sbjct 150 GCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTG 209 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || || |||| || | ||||||||| || | || Sbjct 210 ACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGTTAGGGTC 269 Query 64427 TTTACGAAAATTTGCATTTTAATAAT 64452 ||||| || ||||||||| |||| || Sbjct 270 TTTACAAAGATTTGCATTGTAATTAT 295 >seq44 Length=77107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 153689 GATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTT 153748 ||| ||||| || || | ||||| | || ||||| || || |||| ||| || Sbjct 10964 GATGGCATCGGCAGCGGCACGAGTTCTGAGGTAGTACATTCCAGTCTTCAGACCCTTCTT 10905 Query 153749 CCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTT 153808 ||||| || | ||||| ||| || || || | |||| || || |||||||| Sbjct 10904 CCAAGCGTAGAAGTGCATTGAAGTCAACTTGGCAAAGTTTGGCTCGGCGATGAACACGTT 10845 Query 153809 AAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT--- 153865 |||||||||||||| ||||| || || || || ||||| |||||||| || | | | Sbjct 10844 GAACGACTGGCTCTGGTCGATAAAGGCACCACGGTCGGCAGCCATGTCGATGAGGGTACG 10785 Query 153866 TTTACTGCTCATTTCCCACACAGTTTTGTAGA-CGGCTTTAATGTCGTCGGGTATGCGAT 153924 || || | || ||||| ||||| ||||||| | |||||| ||||| || |||| | Sbjct 10784 TTGACGG---ATCTCCCAGACAGTCTTGTAGAGCTCCTTTAA-CTCGTCAGGAATGCCCT 10729 Query 153925 CAATTTTCTG 153934 || ||||| Sbjct 10728 GGATGTTCTG 10719 >seq1210 Length=15033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| |||| || |||||||||||| Sbjct 12723 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 12782 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||| |||||||| || ||||| || || || || || || ||| Sbjct 12783 GCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 12842 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || | || | ||||||||| || | ||| Sbjct 12843 ACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGAGTC 12902 Query 64427 TTTACGAAAATTTGCATTTTAATAATG 64453 ||||| || |||||||| | |||||| Sbjct 12903 TTTACAAAGATTTGCATGCT-ATAATG 12928 >seq1077 Length=16265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 5445 CCACCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 5386 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | ||||| ||||| |||||||| || Sbjct 5385 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGG 5326 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 ||||| || || || || || || Sbjct 5325 ATTCCCTCCTTGTCCTGGATCTT 5303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499580302101880