Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq406 172 2e-38 seq1084 107 6e-19 seq841 87.8 5e-13 >seq406 Length=38937 Score = 172 bits (190), Expect = 2e-38 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 6642 TGACGCACAGCAAAGGATTGATGCTGCGCGCCATGATGCTGTTAATGCTGCTGCTAAGTC 6701 ||| || ||||| ||||| || |||||| |||||||| || ||||||| ||| | Sbjct 519 TGAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGC 460 Query 6702 TGGCAGGTTGCAACAGCAACTCGCAAACATCCGCAAGCAGCTC-GTCGGATATTCCACCG 6760 |||| ||||||| || || |||| |||||| |||||||| | | | ||| | || Sbjct 459 TGGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCA 401 Query 6761 CTGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCA 6820 || || ||| |||||||||| |||||||||||||||| ||||||||||||| Sbjct 400 CTATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCA 341 Query 6821 AATCTGTCGAAAGAAATCGACAACTGGCAGATTACGCTGACAGGGCAAGAGAGGCGGGAT 6880 ||||| |||| |||| |||||||||||||| ||||||||| |||| || || ||| Sbjct 340 AATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGAC 281 Query 6881 TAGCATGTGAGGCGCAGTACAATTCGCTG 6909 || ||||| ||||||| |||||||| Sbjct 280 GAGTCTGTGAAAAGCAGTACGATTCGCTG 252 Score = 87.8 bits (96), Expect = 5e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 43192 GATATCAAAACCCCGGCCACTGATGCTTTCCTGGCTGAAGTGCGGGCGCATGGCGTGGAG 43251 |||||| |||||||||| || || |||||||||||||||||||||||||| || |||||| Sbjct 29757 GATATCGAAACCCCGGCGACAGACGCTTTCCTGGCTGAAGTGCGGGCGCAGGGTGTGGAG 29698 Query 43252 ATG 43254 ||| Sbjct 29697 ATG 29695 >seq1084 Length=8902 Score = 107 bits (118), Expect = 6e-19 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 32907 CCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTC 32966 ||||| || || |||| | ||||| || || |||||||| ||||| || |||||||| Sbjct 8502 CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTC 8443 Query 32967 TCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTT 33026 || || | ||| || | ||| || || | | ||| || |||||||| || | ||| Sbjct 8442 ACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGAC 8383 Query 33027 CTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAAT 33086 || | ||| ||||||||||| ||||||||||| |||||||| || || | | Sbjct 8382 TTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTAC 8323 Query 33087 TGCAGAGCCTGATGCTGAATATTTAACTTCAGGGTCATTTCCGAGAGTGCCGACAATGAT 33146 |||| || | | | || | ||| || || | || ||||| || | ||| Sbjct 8322 TGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGAT 8263 Query 33147 TACTTTATTTACGCCGCGTGCCAT 33170 ||||||||||||||||| ||||| Sbjct 8262 CACTTTATTTACGCCGCGAGCCAT 8239 >seq841 Length=45872 Score = 87.8 bits (96), Expect = 5e-13 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32912 TACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTCTCCTG 32971 |||| |||||||| || ||||| || || ||||||| || || || ||||| || || | Sbjct 39639 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 39698 Query 32972 CAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTTCTTTT 33031 | |||||||| | || ||||| | || || ||||||||||| || || || | | | Sbjct 39699 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 39758 Query 33032 CTCCTGTTTGCTTGTC 33047 | ||||| || ||||| Sbjct 39759 CCCCTGTCTGTTTGTC 39774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144023935728462