Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq90 192 9e-44 seq46 190 3e-43 seq3473 105 1e-17 seq1502 91.5 2e-13 >seq90 Length=95466 Score = 192 bits (212), Expect = 9e-44 Identities = 484/723 (67%), Gaps = 17/723 (2%) Strand=Plus/Plus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || |||||| |||| |||||||||||||| | || | ||| |||| | | Sbjct 11831 AGCACCTGGGCACGTTGGGCACCGGCAACCACTTCGTGGAGATCTGCCTGGATGAAGACC 11890 Query 41439 AAGACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 | ||||||| |||||||||| ||| |||||||| |||||||| ||||||| Sbjct 11891 AGCGCGTGTGGTTCATGCTGCACTCCGGCTCGCGCGGCGTGGGCAATGCCATCGGCACCT 11950 Query 41499 ACTACATCGAGCGTGCGCAGAAGG-AGTGCGGCATGTGGCACAGCAGCCTGCCGCACAAC 41557 ||| |||||||| || || ||| | |||| | ||| | || |||||| || | Sbjct 11951 ACTTCATCGAGCTGGCCAAGCAGGAAATGCGTC-GCTGGATGATCAACCTGCCCGACCAG 12009 Query 41558 GATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTG 41617 || || || | | | || |||| || | || | ||||||| | || || Sbjct 12010 GACCTGGCCTACCTGCCCGAGGGCAGCACCCACTACGGCGACTACGTGTTCGCCGTGGAC 12069 Query 41618 TGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGCG 41677 ||||||||| |||||| || ||| || | | | ||| ||| | |||| | ||| Sbjct 12070 TGGGCGCAGCGCTTCGCCCGCATGAACCGCGAGATCATGATGCGCAACGTGGTGGCCGCG 12129 Query 41678 CTGCG--TCGTCATCTGCCGGCC-TTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCAC 41734 |||| || ||| | ||| |||||| | || |||||||| |||||||||||| Sbjct 12130 GTGCGCACGGTGATCACCAAGCCGTTCGAGGCGCAGGCCGAGGCGGTCAACTGCCACCAC 12189 Query 41735 AACTATTGTGAGCAG-GAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTGC 41793 ||||| |||||| | ||| |||||||||| ||||| | |||| |||||||| || Sbjct 12190 AACTA-CGTGAGCCGCGAGCACCACTTCGGCAAGGACGTGATGCTCACCCGCAAGGGCGC 12248 Query 41794 GGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTA 41853 ||| |||| || | | ||| |||||||||||||||| |||||| | ||| | Sbjct 12249 GGTGAGTGCGCGCAAGGGCGAGATGGGGATCATTCCGGGCAGCATGGGCGCCAAGAGTTT 12308 Query 41854 CATCGT-CAAGGGCAAGGGCAATCCGCA----TTCGTACTGCTCGTGCAGTCACGGGGCA 41908 |||||| | |||| ||||| | | ||| || || ||||| ||||| || Sbjct 12309 CATCGTGCGCGGGC-TCGGCAACGAGGACAGCTTC-CACAGC---TGCAGCCACGGCGCC 12363 Query 41909 GGACGCCGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGCAG 41968 || ||| ||| || ||| |||| ||||| ||| ||| || |||| || || Sbjct 12364 GGCCGCGTGATGAGCCGTACCCAGGCGCGCAAGCTGATCAGCGTGGACGACCACGCCAAG 12423 Query 41969 CAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCG 42028 || | || ||||||| ||| | ||| ||| ||||||| ||||| || Sbjct 12424 GCCACCGCGCACGTGGAATGCCGCAAGGACGTGGAGGTGGTGGATGAGTCGCCGGCGGCC 12483 Query 42029 TACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATACG 42088 |||||| ||||| ||||||| | ||| |||| ||||| || |||| |||||| Sbjct 12484 TACAAGCCGATCGAAGCGGTGATGGAGGCCCAGCGCGACCTGGTCGAGATCGTGCATACG 12543 Query 42089 CTG 42091 ||| Sbjct 12544 CTG 12546 Score = 150 bits (166), Expect = 3e-31 Identities = 477/726 (66%), Gaps = 24/726 (3%) Strand=Plus/Minus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 ||| | ||||| || || ||||||||||||||| || | ||| |||| | | Sbjct 69802 CAGATCGGCACACTCGGCGGCGGCAACCACTTCATCGAGATCTGCCTGGATGAAACCGGG 69743 Query 41441 GACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCAC 41500 | |||||| | |||||||| ||||| ||||||||| |||||| | |||||| || Sbjct 69742 GCGGTGTGGGTGATGCTGCACAGCGGCTCGCGCGGTACCGGCAACCTGATCGGCACCTAC 69683 Query 41501 TACATCGAGCGTGCGCAGAAGGAG-TG---CGGCATGTGGCACAGCAGCC---TGCCGCA 41553 | |||||||| |||| || || || |||| ||| | | || || ||||| | Sbjct 69682 TTCATCGAGCAGGCGCGCGAGCAGCTGGCCCGGCGCGTG-CTCGGCTTCCACCTGCCGGA 69624 Query 41554 CAACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCAT 41613 ||| || || || |||||| ||| | ||| ||| || ||||||| | | || | Sbjct 69623 CAAGGACCTGGCCTTCTTCATGCAGGGCGAGCCGTTGTTCGATGACTACGTGCAGGCCGT 69564 Query 41614 GCTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCA 41673 | |||||||||||| | ||| || |||| || | || |||| || | ||| | Sbjct 69563 GTCGTGGGCGCAGGATTACGCCCGCGAGAACCGCGAGGCGATGATGGCGCGGGTGCTGGC 69504 Query 41674 AGCGCTGCGTCGTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCA 41733 | | |||| | | |||||| ||| || || | | |||||||||||||||||| Sbjct 69503 CGAGATGCGCCTGCGGCTGCCGAAGTTCCAGTTGGAGAAGCTGGCGGTGAACTGCCACCA 69444 Query 41734 CAACTATTGTG-AGCAGGAGAACCACTTCGG-GCGCAACGTGTGGGTCACGCGCAAGGGT 41791 |||||| ||| || |||| |||| || | | | | || ||| || |||||||| Sbjct 69443 CAACTAC-GTGCAGACCGAGACCCACGGTGGCGAGGAGC-TGCTGGTGACCCGCAAGGGG 69386 Query 41792 GCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCG 41851 ||||| | || || | | ||| ||||||||||| ||||| |||||| ||| Sbjct 69385 GCGGTCAGCGCGCGCGCCGGCGAACTGGGGATCATCCCGGGCAGCATGGGCACGCGCAGC 69326 Query 41852 TACATCGTCAAGGGCAAGGGCAAT-CCGCATTCGT--ACTGCTCGTGCAGTCACGGGGCA 41908 || ||||| |||||||||||| ||| | | || || ||||| ||||| || Sbjct 69325 TATATCGTGCGTGGCAAGGGCAATGCCGAGAGCTTCCACAGC---TGCAGCCACGGTGCC 69269 Query 41909 GGACGCCGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACC---GTCGAAGACCTCGTG 41965 || ||| ||| |||| || ||| | ||| ||||| | | | ||| || Sbjct 69268 GGCCGCGTGATGAGTCGCAGCGCGGCGCGCCAGCAGATCACCCTGGCCCAGCACCGCG-- 69211 Query 41966 CAGCAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCC 42025 || ||| | || ||||||| ||| || ||| | |||||| ||| || Sbjct 69210 -AGGCGACCGCGCACGTGGAATGCCGCAAGGATGCGGCGGTGATCGATGAATCCCCCGCA 69152 Query 42026 GCGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCAT 42085 || |||||| ||||| ||||||| | || |||| |||||||| || || || Sbjct 69151 GCCTACAAGTCGATCGACGCGGTGATGGCCGCGCAGCGCGACCTGGTGGAGGTGGTGCAC 69092 Query 42086 ACGCTG 42091 || ||| Sbjct 69091 ACCCTG 69086 Score = 131 bits (144), Expect = 2e-25 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 40991 GTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCT 41050 || ||| |||||||||||| ||||| ||||| || ||| || || ||||||||| || Sbjct 70138 GTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGGCCACCGTGGGCTCGGTGATCCCT 70079 Query 41051 ACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCG 41110 || | || || ||||||||||| ||||| ||||||||||||||||||||||||| |||| Sbjct 70078 ACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATGGCGGCG 70019 Query 41111 GTTCGTACCA 41120 || || |||| Sbjct 70018 GTGCGCACCA 70009 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 40925 CTCGAACAAGCGGCGCTGGAACAAGCCAAGAACATCACCCGACTGCCCTTCATCCATCCG 40984 || ||| | ||||||| || || |||||||| | || |||||||||||||| ||| Sbjct 11425 CTGGAAGATGCGGCGCGCGAGCAGCTGCAGAACATCGCGCGCCTGCCCTTCATCCA-CCG 11483 Query 40985 CACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTG 41044 | | || || ||||||| |||| |||| |||| ||| ||| | || |||||| Sbjct 11484 CTGGA--TCTCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTG 11541 Query 41045 ATCGCTACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATG 41104 | | || || || ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 11542 GTGCCCACCATCGGCGCGATCATCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATG 11601 Query 41105 GTGGCGGTTCGTACCAGTCTCAAGGCCAGTCAGTTGCCGGACAACCTG 41152 | || || |||| || | ||||| | |||| ||||||||| Sbjct 11602 ATCGCCACCCGCACCACGCTGACCGCCAGCGACCTGCCCGACAACCTG 11649 >seq46 Length=239904 Score = 190 bits (210), Expect = 3e-43 Identities = 493/735 (67%), Gaps = 35/735 (5%) Strand=Plus/Minus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || |||||||||||| |||||||||||||||| ||| ||||| |||| | || Sbjct 144795 AGCACCTGGGCACGCTGGGTACCGGCAACCACTTCATCGAAGTGTGCCTGGATGAAGCGG 144736 Query 41439 AAGACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 |||||| |||||||||| || |||||||| || |||||| ||||||| Sbjct 144735 GGTCGGTGTGGTTCATGCTGCACTCGGGGTCGCGCGGCGTCGGCAACGCCATCGGCACGA 144676 Query 41499 ACTACATCGAGCGTGCGCAGAAGGAGTGCGGCATGTGGCACAGCAGCCTGCCGCACAACG 41558 | |||||||| || |||| || || | || ||| |||||| || | | Sbjct 144675 TGTTCATCGAGCTGGCCAAGAAAGACGCCGAACAGCACCAGCGCAACCTGCCCGACCAGG 144616 Query 41559 ATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTC----CTGTCCATG 41614 | || |||| |||| ||||| |||| || ||| || | ||| | || Sbjct 144615 ACCTGGCGTACTTC---GAGGA------AGGCTCGAAATACTTCGGCGACTATGTGCGTG 144565 Query 41615 CTG-----TGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGA 41669 | | ||||||||| | ||||| || || |||| |||||| |||| | || Sbjct 144564 CGGTGGGCTGGGCGCAGAAGTTCGCGCGCGCCAACCGTGAAGTGATGATGCATCGCCTGG 144505 Query 41670 TCCAAGCGCTGCG-TC-GTCATCTGCCGGCC-TTCGA---GCTGACGGAAGAGGCGGTGA 41723 | ||| |||| || || ||| || ||| ||||| || | |||| ||||||| Sbjct 144504 TGGGCGCGGTGCGCTCGGTGATCAGCAAGCCGTTCGAGGCGCACATGGAA---GCGGTGA 144448 Query 41724 ACTGCCACCACAACTATTGTGAGCAG-GAGAACCACTTCGGGCGCA-ACGTGTGGGTCAC 41781 |||||||||||||||| ||| ||| | || | ||||||| |||| | | || | | || Sbjct 144447 ACTGCCACCACAACTA-TGTCAGCCGCGAAACCCACTTC-GGCGAAGAGGTACTGCTGAC 144390 Query 41782 GCGCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGG 41841 |||||||| ||||| | || | | ||| ||||| ||||||||||| |||||| Sbjct 144389 CCGCAAGGGCGCGGTGAGCGCCAAGGCGGGCGAGCTGGGCATCATTCCGGGCAGCATGGG 144330 Query 41842 TACGAAGTCGTACATCGTCAAGGGCAAGGGCAATCC-GCATTCGTACTGCTCGTGCAGTC 41900 | ||| |||||||| ||||||||||| || | | | | || | ||||| | Sbjct 144329 CGCCAAGAGCTACATCGTGCGCGGCAAGGGCAACCCGGAAAGCTTCATGAGC-TGCAGCC 144271 Query 41901 ACGGGGCAGGACGCCGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACC 41960 |||| || || ||| ||| |||||| ||||| |||| | ||| || | |||| Sbjct 144270 ACGGCGCCGGCCGCAAGATGAGCCGCACCAAGGCCAAGAAGCTGTACACGGTGGCCGACC 144211 Query 41961 TCGT-GCAGCAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATC 42019 || || || ||| | || || ||||||| ||| | | ||| | || || ||| Sbjct 144210 AGGTGGCCGC-GACCGAAGGCGTGGAATGCCGCAAGGACGCCAACGTGATCGACGAGATC 144152 Query 42020 CCGGCCGCGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTC 42079 ||| ||||||||||||||||| ||||||| | || || ||||||||||| Sbjct 144151 CCGATGGCGTACAAGGACATCGACGCCGTGATGCAGGCGCAGCAGGACCTGGTGGAAGTG 144092 Query 42080 GTTCATACGCTGAAG 42094 || | || |||||| Sbjct 144091 GTCTACACCCTGAAG 144077 Score = 107 bits (118), Expect = 3e-18 Identities = 143/196 (73%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 40962 CCCGACTGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCA 41021 |||| |||||| ||||| | |||| ||||| |||||||||| |||| |||| Sbjct 145167 CCCGCCTGCCCATCATCTACAAGCACA---TCGCGGCCATGCCGGACGTGCACTACGGCA 145111 Query 41022 TCGGCAGCACGGTAGGATCGGTGATCGCTACG--CAAGGTGCCATCATTCCGGCGGCGGT 41079 |||| |||||| || |||||||| | || ||||| || | || ||||| || || Sbjct 145110 TCGGTGCCACGGTGGGTTCGGTGATTCCGACCATCAAGG--CCGTGATCCCGGCCGCCGT 145053 Query 41080 GGGCGTGGACATCGGCTGCGGCATGGTGGCGGTTCGTACCAGTCTCAAGGCCAGTCAGTT 41139 ||||||||||||||||||||||||| ||||| |||| || | |||| | | Sbjct 145052 GGGCGTGGACATCGGCTGCGGCATGATGGCGTGCAAGACCACGCTGCACGCCAACGACCT 144993 Query 41140 GCCGGACAACCTGCGC 41155 ||||||||||||| || Sbjct 144992 GCCGGACAACCTGGGC 144977 >seq3473 Length=4258 Score = 105 bits (116), Expect = 1e-17 Identities = 118/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 40962 CCCGACTGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCA 41021 |||| |||| |||||||| |||||| | || ||||||||||||||||| |||| Sbjct 1575 CCCGCATGCCGTTCATCCACCCGCACC---TGGCACTGATGCCGGACGCGCACCTCGGCA 1631 Query 41022 TCGGCAGCACGGTAGGATCGGTGATCGCTACGCAAGGTGCCATCATTCCGGCGGCGGTGG 41081 || ||||| || ||||| ||| | |||| || || ||||| || || || || | Sbjct 1632 AGGGGGCGACGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCG 1691 Query 41082 GCGTGGACATCGGCTGCGGCATGGTGGCGGTTCGTAC 41118 |||| |||||||||||||| ||| | || |||||||| Sbjct 1692 GCGTCGACATCGGCTGCGGGATGATCGCCGTTCGTAC 1728 >seq1502 Length=3386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 186529 TGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACC 186588 ||||| |||||||||||||||||||||||||||| | |||| || | ||||||| ||| Sbjct 1399 TGGTCGGAGTGAGAGGATTCGAACCTCCGACCCCGTCGTCCCGAACGACGTGCGCT-ACC 1457 Query 186589 AGACTGCGCTACACTCGGTAAACAG 186613 || ||||||||||||| || | ||| Sbjct 1458 AGGCTGCGCTACACTCCGTGACCAG 1482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739792489707800