Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq44 309 3e-79 seq19 136 4e-27 >seq44 Length=77107 Score = 309 bits (342), Expect = 3e-79 Identities = 528/760 (69%), Gaps = 23/760 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || ||||| |||||| |||| ||||| || |||||||| || || ||||| Sbjct 9306 GCCACGCCAACCCTCTTCAACTCGGGTACCCCCACACCCCAGATGTCCTCTTGCTTCCTC 9365 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || |||| ||| |||| ||| || | ||| | || ||| | || || | Sbjct 9366 GTCCAGATGAAGGAGGACAGCATCGACGGTATCTACGAGACACTTAAGCAGTGCGCCCTC 9425 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 |||||||| | || || || |||| ||| ||||| | | |||||||| | ||| Sbjct 9426 ATCTCAAAGTCTGCCGGTGGTCTCGGTATCGCCATCCACAAGATCCGTGCCAGCCGCTCC 9485 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||||||||| |||||||| ||||| ||||| || ||||| || |||||||| Sbjct 9486 TACATCCGCGGTACCAACGGCACCTCGAACGGACTCGTACCAATGCTTCGCGTCTTCAAT 9545 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || |||||||| ||||||||||| || | | | |||||| | || || ||||| Sbjct 9546 GACACTGCCCGCTACGTCGACCAGGGTGGCGGAAAGCGCAAGGGTGCCTTTGCCGTCTAC 9605 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| ||||| | ||| | || || || |||||||||||||| Sbjct 9606 CTCGAGCCATGGCACGCCGACGTCTTTGAGTTCCTTGATCTTCGCAAGAACCACGGCAAG 9665 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | ||| | |||||||||||||| |||||||| | || || || ||| Sbjct 9666 GA---GGAGATGCGTGCCCGCGACCTCTTCTACGCGCTCTGGGTCTCTGATCTGTTCATG 9722 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 | || ||||||| ||||| | ||||||||| || ||||||||||| || || || Sbjct 9723 GAGCGTGTCGAGACCAACTCTGACTGGAGTCTCTTCTGTCCCAATGAGGCACCTGGCCTC 9782 Query 94369 TCCGACGTTTGTGGA-TCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCG-CAGGGCA 94426 |||| || ||| | ||| | || | || | || || || || | Sbjct 9783 GCCGAGTGCTGGGGAGATGAGTTCCG-CGAGCTCTACACCAAGTATGAGGCGACA---CC 9838 Query 94427 AGGCC--------AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGT 94478 |||| | | || | | ||| | | || ||| ||| | || Sbjct 9839 TGGCCTCTCTCGTCGCACCGTAA---AGGCTCAGGATCTCTGGTTCGCTATCATCGAGTC 9895 Query 94479 ACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAA 94538 |||| | ||||| ||||| ||||||||| | | ||||||| || |||| ||||||||| Sbjct 9896 ACAGATCGAGACCGGTACCCCCTACATCCTCTACAAGGACGCTTGCAACAGCAAGTCCAA 9955 Query 94539 CCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 ||||||| ||||||| ||| || || || |||||||||||||| |||| || Sbjct 9956 CCAGCAGAACCTCGGAACCATCTCTTGCAGCAACCTTTGCACCGAGATTGTTCAGTACAC 10015 Query 94599 TTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 ||||| || || | || ||||| ||||| | ||| ||| Sbjct 10016 CTCTCCCGATGAAGTCGCCGTGTGCAACCTCGCCTCTATC 10055 Score = 140 bits (154), Expect = 3e-28 Identities = 228/325 (70%), Gaps = 10/325 (3%) Strand=Plus/Plus Query 95101 GTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAA 95160 || || |||||||| || ||||| || | |||||||| || ||||||||| |||||||| Sbjct 10515 GTTGCACCCATGCCTACCGCCTCGACCTCTCAGATCCTCGGAAACAACGAGGCGTTCGAA 10574 Query 95161 CCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAAC 95220 || | |||| |||| | |||| | || || |||||||| || ||| | ||| ||||| Sbjct 10575 CCGTACACCAGCAACATCTACAGTCGTCGCGTCCTCGCCGGAGAGTTCACTGTCGTCAAC 10634 Query 95221 AAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA----AGGTCAAGAA 95276 ||||| || || |||||| | | || | | ||| ||| || | ||||| Sbjct 10635 AAGCAGCTGCTCAAGGACCTCATGGAGCTTGACCTCTGG----ACACCAGAGATGAAGAA 10690 Query 95277 CCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCA 95335 ||| | | ||| | ||| || ||| |||||||||||| | || || || || | | Sbjct 10691 CCAGATCAT-CGCTCACAAGGGTTCCATCCAGAACATCCAGGGCATTCCTGACGAGTTAA 10749 Query 95336 AGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCG 95395 ||| |||||||||||| || |||||||||| || || | ||||| || |||| Sbjct 10750 AGGAGCTCTACAAGACTGTCTGGGAGATCCGTCAACGTACCCTCATCGACATGGCTGCCG 10809 Query 95396 CCCGCGGGCCCTTCATCTGCCAGAG 95420 ||| || |||| ||| |||||| Sbjct 10810 ACCGTGGTGCCTTTATCGACCAGAG 10834 >seq19 Length=879724 Score = 136 bits (150), Expect = 4e-27 Identities = 404/623 (65%), Gaps = 0/623 (0%) Strand=Plus/Plus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||| || ||| || || || || | || |||| || | ||||||| ||| || Sbjct 585027 ATTTCACAAAGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCT 585086 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || | || || || || ||| ||| || | || |||||| | || || ||| Sbjct 585087 TATATTGGTGGAACAAACGGGACCAGCAATGGGATTGTACCTATGTTGAAAGTATTTAAC 585146 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || || |||||||||||||| || | | || ||| |||| || | || Sbjct 585147 GATACCGCCCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTAC 585206 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || |||| | ||| | |||||||| || ||||| || || Sbjct 585207 CTGGAGCCATGGCATGCAGATGTGCTGAGTTTTCTGGACCTGCGTAAAAACCATGGTAAA 585266 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | |||||||| | ||||| || || ||||| ||||| || |||| | Sbjct 585267 GAAGAACTTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGA 585326 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || ||||| | ||||||| | || ||||| ||||| || |||||| | Sbjct 585327 AGGGTAGAAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCA 585386 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || | ||| | || || | || |||| ||||||||| | || ||| Sbjct 585387 GATTGCTTTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGGACGTGCC 585446 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || | || |||| ||| | || |||| |||| | || || Sbjct 585447 CGTAAAACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACC 585506 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || || || || | |||| || || | | ||| ||| ||||||||||| | | Sbjct 585507 GGAACCCCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTA 585566 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||||| || || || || || || || ||| | ||||||||||| |||||| Sbjct 585567 GGAACCATCAAAAGTTCCAACCTTTGTACAGAAATTATAGAGTATACTTCCAAAGACGAG 585626 Query 94612 ATTGCTGTGTGTAACCTGGGCTC 94634 ||||||| |||||||||| ||| Sbjct 585627 GTTGCTGTATGTAACCTGGCCTC 585649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494659337418920