Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_011269.1 Length=154017 Score E Sequences producing significant alignments: (Bits) Value seq9125 109 5e-19 seq3559 98.7 1e-15 seq340 93.3 4e-14 seq375 87.8 2e-12 seq29 87.8 2e-12 seq3096 84.2 2e-11 >seq9125 Length=594 Score = 109 bits (120), Expect = 5e-19 Identities = 210/305 (69%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 150735 TGCACGCCAAGCTGCCACAGTTGTTCGGTCTGCTGCAGCGCAAGGGCCTGATCGAGGACC 150794 |||| | |||||| | || || ||| |||||||| |||||||| || || | Sbjct 4 TGCAGGACAAGCTCGGAAAGCTGCACGGGCTGCTGCAACGCAAGGGATACGCGGATGATC 63 Query 150795 CGCAGATTCTCATCGCGGCCACCGGTGATGCCAACAGCGATCGGGTGCCGCTGCAGGTCG 150854 |||||||||| ||| | | ||| || ||| | ||||| |||||| || || |||| Sbjct 64 CGCAGATTCTGTTCGGTGGTATCGGCGACGCCGATTCCGATCAGGTGCCACTACAAGTCG 123 Query 150855 GCCAGTTCGAGTCCGACAACCGCATCGACG-CCATGATCGAGGCCATGTACCTCGAAGGC 150913 ||||||||||||| | ||| || |||| || ||| | |||| | |||||| ||| Sbjct 124 GCCAGTTCGAGTCGGGTAACGCGATGGACGAGCAGCTTCG-GACCATCTTCCTCGAGGGC 182 Query 150914 TTCGGGGGTGGGCAGGCACACGAGACCTACGAGCTCGCGGCCTACTTCCTGGCCCGGCAC 150973 ||| ||||| ||| || | ||| || | || || || ||| |||| || ||| Sbjct 183 AACGGTGGTGGACAGAAGTCGGAAAGCTATGAATTGGCAGCATATTTCATGGCGCGCCAC 242 Query 150974 ACC--TACCTGGAGCCGTGGCACAAGCAGGGTCGCAAGGGCTACGCCATCTTCATCGGCG 151031 ||| ||| ||| | ||| | |||| || | || |||||| | || ||||||||| Sbjct 243 ACCAGTAC--GGATGCCTGGGAGAAGCGCGGAAGGAAAGGCTACCTCTTCATCATCGGCG 300 Query 151032 ACGAG 151036 ||||| Sbjct 301 ACGAG 305 >seq3559 Length=12351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 112992 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113051 || |||||||||||||| | | || ||| ||||| | |||| ||| |||||| Sbjct 3516 GGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGATCACCGAC 3575 Query 113052 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 113111 ||||||| || | ||| |||||| |||||||||||| ||||||| ||||| | | Sbjct 3576 CTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCGTGTCTCC 3635 Query 113112 TTCCCCGACATCGACGTCGACTTC 113135 | |||||| |||||||||||||| Sbjct 3636 ATGCCCGACTTCGACGTCGACTTC 3659 >seq340 Length=55687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 112991 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113050 |||||| |||||||| |||| | ||||||||||| ||| | || |||||| Sbjct 6316 CGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGTGGCCTGGGCGCTGCAGATCACCGA 6375 Query 113051 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 113108 ||||||||||| |||| ||||| |||||||||| ||| ||||||| || ||| | Sbjct 6376 TCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCGGTTCCTCAACCCCGAACGCGTGTC 6435 Query 113109 GACTTCCCCGACATCGACGTCGACTTC 113135 || | |||||| ||||| |||||||| Sbjct 6436 GA--TGCCCGACTTCGACATCGACTTC 6460 >seq375 Length=82088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 112983 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 113042 |||| ||| ||||| ||||| || |||| || || |||||||| | |||| ||||| Sbjct 20612 TGCCCGTG-GGCCCCGGCCGGGGTTCCGGCGCCGGTTCGCTGGTGGCGTACGCGCTGGGC 20554 Query 113043 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGAC 113102 || ||| | ||||||||| |||||| || |||||||||||||| | || || || Sbjct 20553 ATTACCGACCTGGACCCGATCCGCTACGACTTGCTGTTCGAGCGCTTCCTGAATCCCGAG 20494 Query 113103 CGCCCCGACTTCCCCGACATCGACGTCGACTTC 113135 || | | | |||||| |||| |||||||| Sbjct 20493 CGGGTCTCCATGCCCGACTTCGATATCGACTTC 20461 >seq29 Length=97445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 90788 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 90847 ||||||||||| ||||| ||| |||||||| ||| ||||| || ||||||||||||| Sbjct 16047 ACGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGA 16106 Query 90848 ATCCTGTCACCCCGAC 90863 |||||||| ||||||| Sbjct 16107 ATCCTGTCTCCCCGAC 16122 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 90789 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 90848 |||||||||| ||||| ||| |||||||| ||| ||||| || |||||||||||||| Sbjct 15833 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 15892 Query 90849 TCCTGTCACCCCGAC 90863 ||||||| ||||||| Sbjct 15893 TCCTGTCTCCCCGAC 15907 >seq3096 Length=9392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 90788 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 90847 ||||||||| | ||| |||| || |||||| ||| ||||| ||| ||||||||||| | Sbjct 5388 ACGGGGTGTGGCGCAGCTTGGTAGCGCGCTTCGTTCGGGACGAAGAGGTCGCAGGTTCAA 5329 Query 90848 ATCCTGTCACCCCGAC 90863 |||||||||||||||| Sbjct 5328 ATCCTGTCACCCCGAC 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492662795180840