Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq447 113 1e-20 seq411 104 7e-18 >seq447 Length=48793 Score = 113 bits (124), Expect = 1e-20 Identities = 294/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Plus Query 43281 GGCGCGGAAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCT 43340 |||||| ||||| | || ||| ||||| ||||||| ||| || |||||| ||| Sbjct 8483 GGCGCGCAAGGCCCTGGCCGACATCGAGCGCGCCGAGATCAAGGTCCGCAAGGAGAAGCT 8542 Query 43341 GAAGAGCAGGGCGGATCACCTGCGCGAGG-CTCA-AGCTG-CGTTCAACGAGTTCATTCG 43397 ||||| ||||||||||||||| | ||| | || ||| | | || || | | |||| Sbjct 8543 GAAGAACAGGGCGGATCACCT---CAAGGACACACAGCAGGCATTTAATGCCTGGGTTCG 8599 Query 43398 CCTGCGCGACGCCGACCAGCCGTGCATCAGTTGTGGACGCCACCACGACGGGCAGTNNNN 43457 | || || || | | ||| ||| |||| || || ||||| || | || || | Sbjct 8600 CGCCCGTGATGCGGCACTGCCATGCGTCAGCTGCGGCCGCCATCATGGGGGTCAATACCA 8659 Query 43458 NNNNNNNNNNNNNNNNACGGTTGCCGCCAGCCCAGAGCTTCGCTTCGAGCCGCTCAACGT 43517 || || | || | ||||||||| | || |||||||| |||| Sbjct 8660 CGCCGGCCACTACCGCACTGTAGGAGCGAACCCAGAGCTGAGGTTTGAGCCGCTGAACGC 8719 Query 43518 GAACAAACAATGCGCCCCATGCAACAACCACAAGTCAGGGGACATCGTGAACTACCGGAT 43577 || || |||||||| |||||||||||| ||||| || || | || ||||| || Sbjct 8720 CTGGAAGCAGTGCGCCCCGTGCAACAACCACCTTTCAGGAAACCTCATCAATTACCGAAT 8779 Query 43578 CAACCTGGTGCGCAAGATCGGCGCAGAGAACGTGGAGTGGCTGGAAGGCCCTCATGAGCC 43637 | || | | | ||||||| || || |||| ||||| ||||||||||||||| | Sbjct 8780 CTCGCTCCTACAGAGAATCGGCGAGGAAAAAGTGGCATGGCTTGAAGGCCCTCATGAGGC 8839 Query 43638 CCTGAAACTGACCATCGACGAAATCAAAGCGCTGAAGGCCAAGTTCCGGGCCTGGGTGCG 43697 | ||| ||| | || || | || ||| ||| ||| | | |||||| | Sbjct 8840 CAAGAAGTACACCGTGGATGAGTTGAAGGCGATGACCGCCGACTACCGGGCAAAGACAAA 8899 Query 43698 AGAACTGAAG-AGGGCAACG--GCATGA 43722 |||||||||| |||| | || |||||| Sbjct 8900 AGAACTGAAGAAGGGGATCGCAGCATGA 8927 >seq411 Length=42130 Score = 104 bits (114), Expect = 7e-18 Identities = 147/202 (73%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 23853 TGGGAGTTCGCCATCTCTGCGACCAAGAAGA-GGGAGGCGAACTGTACGCGGGTTGGCCG 23911 |||||| || ||| |||||||||||| || ||| ||||| |||||||| |||||| || Sbjct 28285 TGGGAGCTCACCACATCTGCGACCAAGCAGGTGGGTGGCGAGCTGTACGCAGGTTGGTCG 28344 Query 23912 ACCGGGGGTAAGGCTCCCGGCACACCCGAAGGTGTCCCACGCACAGCCCGCCATAAAGCG 23971 ||| ||| | ||||||| || | ||||||||||||| |||||||| ||| Sbjct 28345 ACCAGGGAATGGAAACCCGGCAGGGCCAGGGCCCTCCCACGCACAGCTCGCCATAATGCG 28404 Query 23972 AGGGCACaaaaaaaCGCC-CT---GCGGCGCTGTGCGCCTTACCGATTCGGGCGGCCAAG 24027 | ||| | || ||| || ||||| ||||||||| | | | |||||| |||| Sbjct 28405 A----ACACGATAATGCCGCTTGCGCGGCACTGTGCGCCATTCTAACCCGGGCGACCAAA 28460 Query 24028 CCCGACCGCTGAATTTGCAGCG 24049 ||||| ||||| || |||||| Sbjct 28461 CCCGATCGCTG-ATGAGCAGCG 28481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149850421120716