Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1971 102 6e-17 seq1210 93.3 3e-14 seq374 89.7 4e-13 >seq1971 Length=9940 Score = 102 bits (112), Expect = 6e-17 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| || || || |||||||| ||| || | | |||| || | || Sbjct 4118 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTG 4059 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | || | ||||||||||||| || ||||| |||||||| || || Sbjct 4058 CTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 3999 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | | || || | || || |||||| || || || | ||| ||||| || || || Sbjct 3998 GGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGT 3939 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATA-AATTTTTTAAT 15197 ||| || || || |||||||||||| || ||| | |||| ||||| Sbjct 3938 CAGGGTCTTGACGAAAATTTGCATAGTTAAAAGATAATTAATTAAT 3893 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| || || || |||||||| || ||| | | | || || | || Sbjct 4802 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTG 4743 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | || | ||||||||||||| ||||| || |||||||| || || Sbjct 4742 CTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 4683 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | | || || | || || || ||| ||| || || | ||| ||||| || || || Sbjct 4682 GGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGT 4623 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||| Sbjct 4622 CAAGGTCTTGACGAAGATTTGCATA 4598 >seq1210 Length=15033 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||| || ||| | | |||| || Sbjct 12711 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 12770 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | |||| ||||||||||||| || ||||| |||||||| Sbjct 12771 AGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 12830 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || || | || || || || | || || || || | ||| ||||| || Sbjct 12831 ATCTTGGCCTTGACGTTCTCGATCGTGTC-CGATCCCTCAACCTCAAGGGTGATGGTCTT 12889 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| |||||||| |||||||| Sbjct 12890 GCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq374 Length=102525 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || ||||||||||| ||| | | |||| || | || Sbjct 623 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGC 564 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | ||||||||||||| ||||| || |||||||| || || Sbjct 563 TTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTT 504 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || || | || || |||||| || || || || |||||||| || || || Sbjct 503 GTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTG 444 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| |||||||||||| Sbjct 443 AGAGTCTTTACGAAAATTTGCATA 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357347018531195