Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1288 154 1e-32 seq44 143 3e-29 seq504 116 4e-21 seq1210 109 5e-19 seq1971 107 2e-18 seq426 104 2e-17 seq374 102 8e-17 seq396 98.7 9e-16 >seq1288 Length=22276 Score = 154 bits (170), Expect = 1e-32 Identities = 497/753 (66%), Gaps = 20/753 (3%) Strand=Plus/Plus Query 46821 AAGCTCACCGACAATGAGCGTAATTTTATCGAAAAAATATTGGCCTTCTTTGCCGCCGCC 46880 ||||||| |||||| ||||| | |||||| || | | ||||||||||| || | Sbjct 207 AAGCTCAACGACAACGAGCGCCACTTTATCACCAACGTGCTCGCCTTCTTTGCGGCGTCG 266 Query 46881 GACAGCATAGTCAACATCAACATCATCGAGCACATGCAGCGCACCGTGCCCGAACTGGAG 46940 ||| |||| |||||| ||| || | || | | | | |||| | ||| Sbjct 267 GACGGCATCGTCAACGAGAACCTCGCCACGCGCTTCATGTCCGAGGTGCAAATCCCCGAG 326 Query 46941 GCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGCATCCACACGGAAATGTACAAC 47000 |||| | ||| ||| ||| | ||||||| ||||||| | || | ||||| Sbjct 327 GCGCGCTGCTTCTACGGCTTCCAAATCGCCATCGAAAACATCCACTCCGAGACGTACAGT 386 Query 47001 CTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGCAAGCGAC-GCTTTTGAACGGTTT 47059 || || || || || |||||| ||| | | ||||| | ||| || |||| | Sbjct 387 CTGCTGATCGACACCTACATCAAGGACACCGCGC-GCAAGGCCCAGCTCTTCAACGCCAT 445 Query 47060 CGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGA 47119 ||||| || ||| |||||||| |||||||||||||| || | || |||||| Sbjct 446 CGAGACGATCCCCGCCGTGCGCAAGAAGGCCGAGTGGGCGATCCGCTGGATCGAAAACTC 505 Query 47120 AAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTC 47179 || || || |||| || | |||| || ||| |||||||||| |||||||||| Sbjct 506 G--CGCAGCTTTG-CCGAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTC 562 Query 47180 GGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGT 47238 |||| || ||| |||| || | | || | || | |||| ||||||||| | Sbjct 563 GGGCTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCT 621 Query 47239 TTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGT---CTCT 47295 | |||||||| ||| | ||||| ||||| ||| | ||||||||||| |||| Sbjct 622 TCTCGAACGAGCTGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGTCTGCTCT 681 Query 47296 ACTACAACACTAGAGTCGATCAAAAGT-TGGACGTGCCCACCGTCAGCGAC-ATGTTTGC 47353 ||| || | ||| || || |||||| ||||||| || | | | || | Sbjct 682 ACTCGAAGCTCACCGTC--TC--GCGTCTGGACGCGCCCACCATC-GAGTCGATCATCCG 736 Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| ||||||||| |||| |||||| || ||||||| ||||||| | | || Sbjct 737 CGACGCCGTCGCCTGCGAGAAGGAGTTCATCACCGAGGCGCTGCCCGTCGACCTGATCGG 796 Query 47414 AATGAAC-GCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 |||||| || | | ||| |||||||||| || ||||||||| ||||| || Sbjct 797 CATGAACAGCCGCTA-CATGGCCCAGTACATCGAGTTCTGCGCCGACCGTCTGCTGGTCG 855 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || || | |||||| ||| || ||| || || ||||||| ||| | | || | Sbjct 856 CCCTCGGCTACCGCAAGATCTACAACGCCGCCAACCCGTTCGAGTGGATGGAGATGATCT 915 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGC 47565 | ||| || ||||||| ||||| ||||| |||| Sbjct 916 CTCTCCAGCGCAAGACAAACTTCTTCGA-AAGC 947 >seq44 Length=77107 Score = 143 bits (158), Expect = 3e-29 Identities = 324/479 (68%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 145720 TCGACGGTGAACTGCGTCGCTTG---AGCGGCCGGTTTTGTGCGCAGATAGTACATGCCG 145776 ||||| |||||||| | || | |||||| | || || || |||||||| || Sbjct 10978 TCGACAGTGAACTGGATGGCATCGGCAGCGGCACGAGTTCTG---AGGTAGTACATTCCA 10922 Query 145777 GTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGC---TCGACATGACCGAGTACGTG 145833 ||||| || |||| ||| | ||| ||||| || || || || | ||| | Sbjct 10921 GTCTTCAGACCCTTCTTCCAAGCGTAGAAGTGCATTGAAGTCAACTTGGCAAAGT---TT 10865 Query 145834 GGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCG 145893 || ||||||| |||| || | || |||||||| || || || | | | |||||||| Sbjct 10864 GGCTCGGCGATGAACACGTTGAACGACTGGCTCTGGTCGATAAAGGCACCACGGTCGGCA 10805 Query 145894 GCCATGTCTATCATGC-ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGAC 145952 |||||||| || | | || |||| | | ||||| | || || |||| ||||| | Sbjct 10804 GCCATGTCGATGAGGGTACGTTGACGGA-TCTCCCAGACAGTCTTGTAGAGCTCCTTTAA 10746 Query 145953 GTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCG 146012 | | || || | | |||||||| | || || || | || | || | ||| Sbjct 10745 CTCGTCAGGAATGCCCTGGATGTTCTGGATGGAACCCTTGTGAGCGATGATCTGGTTCTT 10686 Query 146013 CAATTCTGGAGTGTAAATGTTCAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACCA 146071 || ||||| || | | || |||| || | |||| |||||| || | || |||||| | Sbjct 10685 CATCTCTGGTGTCCAGAGGT-CAAGCTCCATGAGGTCCTTGAGCAGCTGCTTGTTGACGA 10627 Query 146072 CCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACG 146131 | ||||| |||||||| ||||| | || | |||||||||| |||| ||||||| Sbjct 10626 CAGTGAACTCTCCGGCGAGGACGCGACGACTGTAGATGTTGCTGGTGTACGGTTCGAACG 10567 Query 146132 ACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAA 146190 ||||||||| ||||| ||||| | |||| |||||||||||| || |||| |||| Sbjct 10566 CCTCGTTGTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGGCATGGGTGCAACCATCAAA 10508 >seq504 Length=56252 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTG 50713 || || | |||||||| || |||||||||||| || ||||| |||| || ||||| | Sbjct 35825 GCCTCGAGGTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGTGGGGGCTCCGTGCTCC 35884 Query 50714 CGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 50773 ||| || || || ||||| ||||||| ||| ||||||||||| | |||||||| || Sbjct 35885 TTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTTGGTGGTGTCGCCAAAC 35944 Query 50774 TCGTGCACGTGGAACCCGTGAAAGCCCTT 50802 | ||| |||||||| ||||| | ||||| Sbjct 35945 TGGTGGACGTGGAATCCGTGCAGTCCCTT 35973 >seq1210 Length=15033 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| || Sbjct 12693 CCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 12752 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| ||||| || ||||| || Sbjct 12753 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGG 12812 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||||||| | ||| || Sbjct 12813 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACC 12872 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| || ||||| |||||||| || |||||| Sbjct 12873 TCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCATG 12920 >seq1971 Length=9940 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || || || || || Sbjct 4567 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 4508 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 4507 GCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTG 4448 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| | ||| || |||| ||| | || ||||||||||| || Sbjct 4447 ACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 4388 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 4387 TTGACGAAGATCTGCAT 4371 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || ||||| || || ||||| |||||| Sbjct 4111 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 4052 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || ||||| || || |||||||||||| ||| || |||| Sbjct 4051 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTG 3992 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | | ||| || || | ||| | || ||||||||||| || Sbjct 3991 ACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 3932 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 3931 TTGACGAAAATTTGCAT 3915 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | ||||| ||| || ||||| || || Sbjct 4795 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 4736 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || ||||| || ||||||||||||||| ||| || |||| Sbjct 4735 GCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 4676 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | | ||||| |||| ||| | || ||||| |||| || Sbjct 4675 ACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTC 4616 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 4615 TTGACGAAGATTTGCAT 4599 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || ||||| || || Sbjct 5023 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 4964 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || ||||| || || |||||||||||| ||| || |||| Sbjct 4963 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTG 4904 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| || | || ||||| |||| || Sbjct 4903 ACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAAGGTC 4844 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 4843 TTGACGAAAATCTGCAT 4827 >seq426 Length=101737 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||||||||| | ||||| ||| || || || || ||| Sbjct 90 GTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCA 149 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| || ||||| || ||||||||||| || || |||| Sbjct 150 GCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTG 209 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| || || | || ||| || || | ||| | || ||||| || ||||| Sbjct 210 ACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTC 269 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| || ||||| Sbjct 270 TTTACAAAGATTTGCAT 286 >seq374 Length=102525 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || ||||||||||| | ||||| || || || || |||||| Sbjct 389 GTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCA 330 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| ||||| || ||||||||||||||| ||| || ||| Sbjct 329 GCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTT 270 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| |||| | |||||||||| || | || ||||| || || || Sbjct 269 ACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 210 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||| || |||||| || Sbjct 209 TTGACAAAGATTTGCATGCCT 189 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||||||| | ||||| || || ||||| || || Sbjct 845 GTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 786 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| |||||||| || |||||||||||||| || || |||| Sbjct 785 GCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTG 726 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| | ||| || || | || | || || || || || || Sbjct 725 ACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTC 666 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| ||||| ||||| Sbjct 665 TTTACGAAAATTTGCAT 649 >seq396 Length=82706 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || ||||||||||| | ||||| ||| || || || || ||| Sbjct 90 GTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCA 149 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| || ||||||||||| || || |||| Sbjct 150 GCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTG 209 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| || || | || ||| || || | ||| | || ||||| || || || Sbjct 210 ACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGTTAGGGTC 269 Query 127097 TTTACAAAAATCTGCAT 127113 |||||||| || ||||| Sbjct 270 TTTACAAAGATTTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475439418790480