Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq4950 881 0.0 seq846 605 8e-169 seq2747 86.0 2e-12 >seq4950 Length=777 Score = 881 bits (976), Expect = 0.0 Identities = 604/681 (89%), Gaps = 0/681 (0%) Strand=Plus/Minus Query 21651 CATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTCTGGAAGGTGTCAGATACAAAC 21710 |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| || Sbjct 777 CATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC 718 Query 21711 CATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATGGCCACACCGGAAAAGACATCA 21770 |||| || || | || ||||| | |||||| ||| | || || || ||||||||||||| Sbjct 717 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 658 Query 21771 TGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTATCA 21830 ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 657 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 598 Query 21831 CTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATATACCGGAAACAACGCGCGGCG 21890 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 597 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 538 Query 21891 CTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATTTCAGAACATCGACGCTTCTTC 21950 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 537 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 478 Query 21951 GCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACG 22010 ||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 477 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 418 Query 22011 CTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTGAGGTTGAGCGTGATGTCTGTT 22070 |||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||| Sbjct 417 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 358 Query 22071 TGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCAT 22130 |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||| Sbjct 357 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 298 Query 22131 CGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCA 22190 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct 297 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 238 Query 22191 GCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAAC 22250 |||||||| | | | | ||| ||||||||||||| ||||||| || ||||| | Sbjct 237 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 178 Query 22251 GCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAA 22310 ||||||||||||||| || | ||| || | | |||||| |||||| | ||| ||||||| Sbjct 177 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 118 Query 22311 AGCTGAGAATGATGCTCTTCG 22331 |||||| ||||||||||| || Sbjct 117 AGCTGAAAATGATGCTCTGCG 97 >seq846 Length=12855 Score = 605 bits (670), Expect = 8e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 13000 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13059 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 7057 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 7115 Query 13060 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13119 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 7116 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 7175 Query 13120 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13179 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 7176 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 7235 Query 13180 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13239 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 7236 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 7295 Query 13240 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13299 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 7296 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 7355 Query 13300 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13359 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 7356 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 7415 Query 13360 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13419 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 7416 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 7475 Query 13420 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13478 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 7476 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 7535 Query 13479 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13534 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 7536 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 7593 Query 13535 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13594 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 7594 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 7653 Query 13595 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13654 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 7654 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 7713 Query 13655 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13714 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 7714 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 7773 Query 13715 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13774 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 7774 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 7833 Query 13775 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13834 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 7834 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 7893 Query 13835 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13894 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 7894 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 7953 Query 13895 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 13954 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 7954 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 8013 Query 13955 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14013 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 8014 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 8072 Query 14014 CGTCCTGA 14021 ||||| || Sbjct 8073 CGTCCCGA 8080 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 4624 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4683 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 1691 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 1750 Query 4684 GTT--TGTT-ATTGCTGC 4698 | | |||| |||||||| Sbjct 1751 GATGCTGTTCATTGCTGC 1768 >seq2747 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3027 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3078 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 24 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134073156173322